Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0436 ATGTCATCAACAAGTAGACCAAGCCAAGCTTCCAGGAACACAGGAGGAGGATCTTCTTCTTCCTCACAATCAAGACACAGCTCCAGAATCCTCACTCAAACCTCCATAGATGCAAAGCTTCAATCACACTTTGAGCAATCCGGTTCTTCCTTCGACTACTCCACTTCAATCCATCTCACCAACAACCCAACTGCCGCACCGCCCGCCGCCACCACCACCGCATACCTTCACCAAATTCAAAAATCCAACCTCATCCAACCCTTTGGCTGTGTCTTAGCCCTCCACCCCACCACCCTCAAACTCATTGCCTTCAGCCAAAATGCTCCCGAAATGCTCACCACTGTCGCCCACACCGTCCCTGACGGCGACAACCATCCCTTCCTCGCCATTGGCACCGACCTCCGATCCATCTTCACCGCCCCCACAGCCACCGCCCTCCTCAAGGCCCTTGCCTTCCCCGACGTCACCCTCCTCAACCCTATTCTCGTCCACTCCAAGTCCTCAGGGAAGCCCTTTTACGCCATTCTCCATCGCGTCACCGGTAGCCTTATCATCGACTTTGAACCTCTCAAACCCGACCAAGTCCCTGTCACCGCTGCGGGAGCTCTCCAATCCTATAAGCTCGCAGCCAAAGCCATCACTCGTCTCCAGGCTCTCCCCAGTGGGAGCTTGGTTAGACTGTGTGACACTATGGTTCAAGAAGTGTTTGAGTTGACGGGTTACGATAGAGTGATGGCTTATAAGTTTCATGATGATGATCATGGAGAGGTTTTCTCCGAGGTTACGAAGCCTGGCCTCGAACCTTATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCAAGATTTTTGTTCATGAAGAACAAGGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAGGTCATTCAAGATCACAATCTTGAGTTTGATTTGACTTTGTGTGGCTCAACTTTAAGAGCTCCTCATTGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCATTGGTTATGGCCATTGTGGTAAATGAAGAAGAAGATGAAGAGAATTTTGATCAAAACAACAATAATGATGCTTCTTTGCAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCACAACACAACTCCTAGATTTGTCCCTTTTCCTCTTAGATATGCCTGTGAATTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATGTGACATGTTAATGCGTGATGCTCCTTTAGGGATTGTGTCAAGAACTCCTAATATAATGGATCTTGTCAAATCCGATGGAGCTGCATTATTGTACAATAACAAGGTATGGAGATTAGGAATAACCCCTACTGATTTTCATCTTCAAGATATTGCTTCGTGGATTTTGGAGTATCATATGGATTCCACTGGTTTGAGTACTGATAGCTTGTACGATGCCGGGTACCCTGGCGCGCTTGCTCTTGGCGACGTGGTGTGTGGGATGGCTGCTGTGAGGATATCTTCCAACGACATGATTTTCTGGTTTCGATCGCACACTGCGTCGGAGATTCGGTGGGGTGGGGCAAAGCATGAGCCGGGTGAGAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTTAAGACAAGGAGTTTGCCATGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATACTAAGAAATACTTTTAAAGATAAAGATGATCATATGAGTGAGATTCATAGAAAATCAATACAAACAACACTTAGTGATCTCAAGATTCTGGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTTGATGGGCTTGTGAATGGTTGGAACTCAAAAATTGCTGAATTGACTGGACTTTCGGTTGACAAAGCCATTGGCAAGAATTTGCTCACATTAGTGGAAGATTCTTCTGTTGAAATTGTCAAGAAGATGTTGCTCTTGGCATTGCAAGGTCAAGAGGAAAAAAACGTTCAATTCGAGATAAAAACACACAATGTGGACATCAAGTCGGGCTCGATAAGCCTAATAGTAAATGCTTGTGCAAGCAAAGACTTAAGTGAAAATGTGGTGGGAGTATGCTTTGTAGCACAAGACATAACATGTCAAAAGATAGTAATGGACAAATTCACAAAACTACAAGGTGATTACAAAACCATAGTACAAAACCCTAACCCACTAATCCCTCCAATATTTGGGTTAGATGAATTTGGTTGGTGCACAGAATGGAACTTAGCAATGACAAAACTAAGTGGATGGTCTCGTGAATCAGTTGTCAACAAAATGCTTTTAGGAGAAGTTTTTGGAACACAATTAAACAACTCATCATCATGTTGTTGCCAACTCAAGAATCAAGAAGCATTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAGTGGGCAAGACCCTGAAAAGAATATTTCGTTTGGTTTTTATGGAAGAAATGGGATGTTTGTGGAATGTCTATTATGTGTTAATAAGATATTGGATAGAGATGGTGGAGTTATTGGGGTTTTTTGTTTCTTGCAACTTGCAAGTCAAGAATTGCAACAAGCTTTGAGTATTCAAAAATTGTGTGAGAGAACTGCTTTGAATAGGTTGAAGGCATTGGGATATATGAAGAGGCAGATTCAAAATCCACTTTGTGGGATTATTTTTTCAAGGAAAATGTTGCAACAAACTCAGTTGGGAGTGGAACAGAAGCAACTTTTGATTAATAGTGTTAATTGTCAAAGGCAAATCTCCAAGGTTCTTGATGAGTCTCATGATCTTGATCATATTATTCAAGGTTTGATTGAATTAGAAATGGTTGAGTTTTCATTATATGAAGTATTGGTGGTAGCAATAAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGCATTCAAATAGAAAATGAAGTTGGAGAAGAGATAATGTGTGAGACATTATATGGAGACAATTTGAGACTTCAACAAATAATGGCTGATTTCTTGTTGATATCAGTTCATTATGCACCAACAGGTGGCCAACTTATGCTTTCAACAACTTTTACTAATAAGGATCATTTTGGGAACTCACTACATCTTCTTCATCTTGAATTCAGGATAACATATGTTGGAGGAGGCATACCAGAATCATTGTTGAATGAGATGTTTGGAAATGATATGGATCATGAGGATTCATCTGAAGAAGGTTTTAGCCTTTTTATAAGTAGAAAACTTGTGAAGATGATGAATGGAGATGTGAGATATGTGAGAGAAGCTGCCAAATCAACCTTCATTATAACTCTTCAACTTGCTGCTGCTCATAAGTAA 3441 41.3 MSSTSRPSQASRNTGGGSSSSSQSRHSSRILTQTSIDAKLQSHFEQSGSSFDYSTSIHLTNNPTAAPPAATTTAYLHQIQKSNLIQPFGCVLALHPTTLKLIAFSQNAPEMLTTVAHTVPDGDNHPFLAIGTDLRSIFTAPTATALLKALAFPDVTLLNPILVHSKSSGKPFYAILHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALPSGSLVRLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLEFDLTLCGSTLRAPHCCHLQYMENMDSIASLVMAIVVNEEEDEENFDQNNNNDASLQKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKVWRLGITPTDFHLQDIASWILEYHMDSTGLSTDSLYDAGYPGALALGDVVCGMAAVRISSNDMIFWFRSHTASEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDKDDHMSEIHRKSIQTTLSDLKILDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVDKAIGKNLLTLVEDSSVEIVKKMLLLALQGQEEKNVQFEIKTHNVDIKSGSISLIVNACASKDLSENVVGVCFVAQDITCQKIVMDKFTKLQGDYKTIVQNPNPLIPPIFGLDEFGWCTEWNLAMTKLSGWSRESVVNKMLLGEVFGTQLNNSSSCCCQLKNQEAFVNLGIVLNNAMSGQDPEKNISFGFYGRNGMFVECLLCVNKILDRDGGVIGVFCFLQLASQELQQALSIQKLCERTALNRLKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGLIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENEVGEEIMCETLYGDNLRLQQIMADFLLISVHYAPTGGQLMLSTTFTNKDHFGNSLHLLHLEFRITYVGGGIPESLLNEMFGNDMDHEDSSEEGFSLFISRKLVKMMNGDVRYVREAAKSTFIITLQLAAAHK 1146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6684261 6688823 - PI0007589.1 Cmetu03g0436 350580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0436 1146 SMART gaf_1 223 422 IPR003018 GO:0005515
Cmetu03g0436 1146 Pfam GAF domain 224 412 IPR003018 GO:0005515
Cmetu03g0436 1146 FunFam Phytochrome 627 758 - -
Cmetu03g0436 1146 Pfam Phytochrome region 425 600 IPR013515 GO:0006355|GO:0009584
Cmetu03g0436 1146 NCBIfam PAS domain S-box protein 638 751 IPR000014 -
Cmetu03g0436 1146 Gene3D - 417 590 IPR043150 -
Cmetu03g0436 1146 MobiDBLite consensus disorder prediction 1 29 - -
Cmetu03g0436 1146 Gene3D - 958 1137 IPR036890 -
Cmetu03g0436 1146 PANTHER TWO-COMPONENT HISTIDINE KINASE 926 1135 - -
Cmetu03g0436 1146 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 972 1139 IPR036890 -
Cmetu03g0436 1146 PIRSF Phytochrome_conventional 7 1146 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cmetu03g0436 1146 Gene3D PAS domain 627 762 - -
Cmetu03g0436 1146 SUPERFAMILY GAF domain-like 203 409 - -
Cmetu03g0436 1146 SUPERFAMILY PYP-like sensor domain (PAS domain) 79 193 IPR035965 -
Cmetu03g0436 1146 SUPERFAMILY PYP-like sensor domain (PAS domain) 637 744 IPR035965 -
Cmetu03g0436 1146 ProSiteProfiles PAS repeat profile. 764 816 IPR000014 -
Cmetu03g0436 1146 SUPERFAMILY GAF domain-like 420 598 - -
Cmetu03g0436 1146 SUPERFAMILY PYP-like sensor domain (PAS domain) 778 889 IPR035965 -
Cmetu03g0436 1146 ProSiteProfiles Histidine kinase domain profile. 921 1143 IPR005467 -
Cmetu03g0436 1146 Pfam PAS fold 634 748 IPR013767 GO:0006355
Cmetu03g0436 1146 Pfam PAS fold 764 892 IPR013767 GO:0006355
Cmetu03g0436 1146 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 223 402 IPR016132 -
Cmetu03g0436 1146 FunFam Phytochrome 417 548 - -
Cmetu03g0436 1146 CDD PAS 642 748 IPR000014 -
Cmetu03g0436 1146 ProSiteProfiles PAS repeat profile. 631 701 IPR000014 -
Cmetu03g0436 1146 Pfam PAS fold 74 189 IPR013654 GO:0006355
Cmetu03g0436 1146 SMART pas_2 633 699 IPR000014 -
Cmetu03g0436 1146 SMART pas_2 763 835 IPR000014 -
Cmetu03g0436 1146 CDD PAS 775 892 IPR000014 -
Cmetu03g0436 1146 Gene3D PAS domain 78 326 - -
Cmetu03g0436 1146 PRINTS Phytochrome signature 138 160 IPR001294 GO:0006355|GO:0009584
Cmetu03g0436 1146 PRINTS Phytochrome signature 726 743 IPR001294 GO:0006355|GO:0009584
Cmetu03g0436 1146 PRINTS Phytochrome signature 323 344 IPR001294 GO:0006355|GO:0009584
Cmetu03g0436 1146 PRINTS Phytochrome signature 560 578 IPR001294 GO:0006355|GO:0009584
Cmetu03g0436 1146 PRINTS Phytochrome signature 442 462 IPR001294 GO:0006355|GO:0009584
Cmetu03g0436 1146 PRINTS Phytochrome signature 634 650 IPR001294 GO:0006355|GO:0009584
Cmetu03g0436 1146 PRINTS Phytochrome signature 527 546 IPR001294 GO:0006355|GO:0009584
Cmetu03g0436 1146 PRINTS Phytochrome signature 238 257 IPR001294 GO:0006355|GO:0009584
Cmetu03g0436 1146 PRINTS Phytochrome signature 746 766 IPR001294 GO:0006355|GO:0009584
Cmetu03g0436 1146 PRINTS Phytochrome signature 653 668 IPR001294 GO:0006355|GO:0009584
Cmetu03g0436 1146 Coils Coil 409 429 - -
Cmetu03g0436 1146 SMART HKATPase_4 1027 1143 IPR003594 -
Cmetu03g0436 1146 ProSitePatterns Phytochrome chromophore attachment site signature. 323 332 IPR013516 -
Cmetu03g0436 1146 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1027 1141 IPR003594 -
Cmetu03g0436 1146 Gene3D - 204 573 IPR029016 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0436 K12120 - - csv:101219585 2176.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0436 Cmetu-Chr3:6684261 Cmetu06g1585 Cmetu-Chr6:5450876 0.00E+00 dispersed
Cmetu03g0436 Cmetu-Chr3:6684261 Cmetu03g2257 Cmetu-Chr3:6713839 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0019 . 5 1168 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1410.6
Cmetu09g0510 . 103 1066 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1330.5
Cmetu10g1485 . 4 847 Histidine Kinase Gene Family AT2G01830 71.1 0.0e+00 1135.6
Cmetu11g2204 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.4e-269 926.4
Cmetu11g0071 . 1 936 Histidine Kinase Gene Family AT2G01830 50.9 1.5e-258 889.8
Cmetu07g2088 . 1 898 Histidine Kinase Gene Family AT5G10720 56.5 2.0e-251 865.9
Cmetu03g2257 . 1 1078 Histidine Kinase Gene Family AT1G09570 76.2 0.0e+00 1718.7
Cmetu03g0436 . 3 1146 Histidine Kinase Gene Family AT1G09570 71.4 0.0e+00 1631.3
Cmetu01g1663 . 17 1109 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1214.5
Cmetu06g1585 . 34 1098 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1156.4
Cmetu06g1585 . 13 1039 Histidine Kinase Gene Family AT2G18790 77.2 0.0e+00 1620.9
Cmetu12g0178 . 32 1054 Histidine Kinase Gene Family AT2G18790 59.9 0.0e+00 1241.5
Cmetu01g1663 . 25 1066 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Cmetu03g0436 . 22 1077 Histidine Kinase Gene Family AT2G18790 51.0 3.8e-308 1054.7
Cmetu03g2257 . 21 1012 Histidine Kinase Gene Family AT2G18790 50.2 5.1e-289 991.1
Cmetu01g1663 . 17 1113 Histidine Kinase Gene Family AT5G35840 62.4 0.0e+00 1382.9
Cmetu06g1585 . 21 1100 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1111.3
Cmetu06g1585 . 3 1100 Histidine Kinase Gene Family AT4G16250 74.3 0.0e+00 1664.8
Cmetu12g0178 . 39 1116 Histidine Kinase Gene Family AT4G16250 58.2 0.0e+00 1283.5
Cmetu01g1663 . 25 1112 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Cmetu03g2257 . 8 1073 Histidine Kinase Gene Family AT4G16250 50.1 8.1e-306 1047.0
Cmetu12g0178 . 16 1117 Histidine Kinase Gene Family AT4G18130 63.3 0.0e+00 1383.6
Cmetu06g1585 . 38 1098 Histidine Kinase Gene Family AT4G18130 57.9 0.0e+00 1238.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56