Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0500 ATGGCTGACGAAGCCCAGTATTCATCTGCTACTGATACTCCTTCCAACAAGCGCAAGTACGACGACCAACCTCCACCCCGCCGCCCAACTGGCTTTTCCGGCCCCATCACTTCCCCTTCCTCTGATTCCGCTCCCTCCTACAACAACGTCCCTCCCCCTATGGATGAGATCCAGCTCGCTAAGCAGCGTGCTCAGGAGATTGCCTCTCGCTTGATTATCTCCAGCGGTGGCGTTGGGGCCGGTGCTGGACCTGGCGTTGGAGCTGATGTCAAACGTCCGAGGGTTGAGAACGGCGGCGGGTATGATTCCTACGACAAGGGTTTTAGTTCTGGTCCAGACCTGAAGCCTCACATGTCAAATTCAGCCCCTTCAGCAATACCTGTTTCCTATGGTTTCCAAGGGTCAAGCAAGAAAATTGAAATTCCAAATGGGAGAGTAGGCGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGACGCAGATCCCAACTCTACTACCCGGATGGTTGAGCTAATGGGCACCCCTGATCAAATTGCTAAGGCTGAGCAGCTGATAAATGATGTTCTTTCTGAGGCTGAATCTGGCGGTTCTGGCATAGTATCACGAAGACTAACAGGCCCTTCAGGATCTGAGCAGTTTGTTATGAAAATTCCTAATAATAAGGTTGGCTTGGTTATTGGTAAGGGTGGTGAAACAATCAAAAGTATGCAAGCTAGGACTGGAGCACGTATCCAGGTGATACCATTGCACTTACCCCCTGGGGACACATCTACAGAAAGAACCTTACAGATTGATGGTTCAAGTGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTATCAGCGAGAATCGCGCAAGAAATTCAGGTATGTCAGGAGGGTATAATCAGCAAGGTTATCAAGCTCGACCTCCTTCAAGTTGGGGTCCTCCTGGGGCTCCACCAATGCAGCAGCCTAGTTATGGCTATGGACAACAAGGTGGATACTCCGCTCCTTCATCTCAGTATAACATGTCACAACCTCCTTATCAGGGTTATTCCCAACCAGCATCTGGTGGATATGCTTCCAACTGGGACCAGTCTACCGTTCCGCCAAATCAACCTGCTACTCAAGGAAGTGGTTATGATTACTACGGTCAACAGGCTCCACAGCAACAACAGACAGCTGGAGGTCCTGGTGCTACCGGAGACAACAGTGGTTATAGTTATGGTCAACCACCAGCTTCTACTTATAATCAACAGGGTTATTCTCAAGATGGCTATGGTGGTAATTACCATGCACCTCAGTCTAGTTATGGCCAACCTCCTACATATGATCAACAAGGTTATAGTTCTACCACAAACTATGGTAATGTGGCTAATGCCGCTCAAGATGGGCTCAATTCATATGGCTCTCAAGGGGACTCATCACAGACGGTCCCTCCTGCTGCACAACCCTCTTCAGTGAGCCAGCAAGGTTATAGTGCAAACCAACAGCCTAGCCCTAACCCAGGGAGTTACCCTCCACCAAGTCAGTCGGGGTATGGAATGACTGCACCTTCCCAGACTGGCTATGGCAATCAACCAGCTGCTCAGACTGCTTATGGGGCTGCTTATGGAGCTCCTCAGACTCAGAAACAACCTACAAATCCTCCAGCCTATGGTCAAAGCACTCAGTCACCGAGCACACCTAGTGGCTATGGGCAACCTGCTGGATTGCCGTCTGGATACTCAAGTTCTCAGCCTCCCGCATCAGGGTACACCCAACCAGATTCTGCTTCTCAACGTGCTCCACCATCCAGTTATGGTGCTGCAGCTCAGCCAGGGTTTGCGCCACCTCCATATGGTGGTGTTCCTCCAACAAATCAGTCAGCTTACGGGCAAGCCCCACCACCTTATGGTGGCTCTTATGGTGCTGGTTACCCTCAGCCCCAATATTCATCTGAAGGTAATGCAGGTGGCGCCACTCGTGGGGGCTATGATTCTGCGTCCGCTGCTCAGGCAGTGCCCCAAAGTGGGGTTGCAAAAGCATCACCAAAAAGTTGA 2076 50.24 MADEAQYSSATDTPSNKRKYDDQPPPRRPTGFSGPITSPSSDSAPSYNNVPPPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADVKRPRVENGGGYDSYDKGFSSGPDLKPHMSNSAPSAIPVSYGFQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSTTRMVELMGTPDQIAKAEQLINDVLSEAESGGSGIVSRRLTGPSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVISENRARNSGMSGGYNQQGYQARPPSSWGPPGAPPMQQPSYGYGQQGGYSAPSSQYNMSQPPYQGYSQPASGGYASNWDQSTVPPNQPATQGSGYDYYGQQAPQQQQTAGGPGATGDNSGYSYGQPPASTYNQQGYSQDGYGGNYHAPQSSYGQPPTYDQQGYSSTTNYGNVANAAQDGLNSYGSQGDSSQTVPPAAQPSSVSQQGYSANQQPSPNPGSYPPPSQSGYGMTAPSQTGYGNQPAAQTAYGAAYGAPQTQKQPTNPPAYGQSTQSPSTPSGYGQPAGLPSGYSSSQPPASGYTQPDSASQRAPPSSYGAAAQPGFAPPPYGGVPPTNQSAYGQAPPPYGGSYGAGYPQPQYSSEGNAGGATRGGYDSASAAQAVPQSGVAKASPKS 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 651376 657826 + PI0010087.1 Cmetu03g0500 350644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0500 691 MobiDBLite consensus disorder prediction 301 321 - -
Cmetu03g0500 691 ProSiteProfiles Type-1 KH domain profile. 226 294 - -
Cmetu03g0500 691 MobiDBLite consensus disorder prediction 548 611 - -
Cmetu03g0500 691 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 222 301 IPR036612 GO:0003723
Cmetu03g0500 691 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 128 466 - -
Cmetu03g0500 691 MobiDBLite consensus disorder prediction 1 56 - -
Cmetu03g0500 691 MobiDBLite consensus disorder prediction 79 101 - -
Cmetu03g0500 691 MobiDBLite consensus disorder prediction 33 48 - -
Cmetu03g0500 691 Pfam KH domain 230 296 IPR004088 GO:0003723
Cmetu03g0500 691 Pfam KH domain 137 203 IPR004088 GO:0003723
Cmetu03g0500 691 Gene3D K Homology domain, type 1 131 222 IPR036612 GO:0003723
Cmetu03g0500 691 Gene3D K Homology domain, type 1 223 321 IPR036612 GO:0003723
Cmetu03g0500 691 MobiDBLite consensus disorder prediction 520 540 - -
Cmetu03g0500 691 ProSiteProfiles Type-1 KH domain profile. 134 201 - -
Cmetu03g0500 691 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 137 212 IPR036612 GO:0003723
Cmetu03g0500 691 FunFam KH domain-containing protein 222 321 - -
Cmetu03g0500 691 SMART kh_6 225 299 IPR004087 GO:0003676
Cmetu03g0500 691 SMART kh_6 133 206 IPR004087 GO:0003676
Cmetu03g0500 691 MobiDBLite consensus disorder prediction 301 691 - -
Cmetu03g0500 691 MobiDBLite consensus disorder prediction 336 511 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0500 K13210 - - csv:101216803 1236.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2294 Cmetu-Chr1:240995 Cmetu03g0500 Cmetu-Chr3:651376 8.30E-77 dispersed
Cmetu03g0500 Cmetu-Chr3:651376 Cmetu09g1509 Cmetu-Chr9:21382166 1.60E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g62 . . . . . . . . Cmo05g00109 Cmo12g00572 . Cma05g00102 . Car12g00580 Sed08g1760 Cpe07g00553 . Bhi04g00496 Tan02g1648 Cmetu03g0500 . Hepe08g1383 . Lcy13g2177 . . . . . . . Cone4ag1652 . Cone17ag0917 Cone20ag0260 . . . . Blo17g00293 Blo18g00287 . Bda13g01608 Bpe14g00257 . . . . . . . Cma12g00631 . Car05g00374 Cpe11g00082 . . . . . . . . Cla08g01021 Cam08g1470 Cec08g1048 Cco08g1172 Clacu08g1174 . Cre08g0956 Lsi08g01575 Csa02g01846 Chy03g01638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007208 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 2 1 1 37