Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0531 ATGGCTGCCGCAGCTGTAACCACCGCCGAGCAAAGCCGTCACCGATCATTGTCCAAAGTGGGCATAATTGGGGCTGGCATTAGCGGAATCGCCGCCGCTAAGCATCTCTCCAGTCACCACCCGGTGGTGTTTGAGGCGACAGACTCCATAGGCGGCGTGTGGAAGCACTGCGCTTATCGGACCACAAGGCTGCAGACGCCTCGCCGGGATTTTGAATTCTCCGACTACCAGTGGCCACCGCAGACGACGGGGAGCGATGAGTTTCCAACGTATTTGGAGGTTTTGGATTATTTGCATGGCTATGCAACGCATTTTGATGTGTTGAAGTTCGTCAAGTTTAATAGCAAAGTGGTCCAACTTCGATACATTGGCGGCCCCGAAGCTGAAGATTCCACGGTGACCGGAGTGTACGGAAGTTTACTTAATGGCCGTCCTGTTTGGGAGGTCGCCGTTCAAGACACTCAGCTCAACACCATTCAGTGGTATGAATTCGAGTTGGTAGTGATATGTGTGGGAAGATATGGAGACATACCAAACATACCAATATTCCCTCACAATAAAGGTCAAGAGGTTTTCAAAGGCAAGGTTTTACACTCAATGGACTACGCGAAGCTCAACCATGATGATGCGCATGCCCTGCTTCACAACAAGCGCGTTATTGTTGTTGGGTATCGTAAATCTGCGATTGATCTAGCTGTTGAATGTGCTGAAGCAAATCAAGGACCAGAAGGGAAGGCTTGCACAATGGTGATTAGGTCACTTCATTGGACAGTCCCATCCTATAGAATATGGGGATTACCTTTTTTCTTGTTTTATTCAACAAGATTCTCCCAATTCCTTCAAGAAACACCAAATCAAGGCCTTCTTAAGTCCATTTTTTGCTCCCTCTTTTCTCCAATGATCAGAAAGATAATTTCTAAGTTCATAGAGTCATATTTAACGTGGAAGCTGCCATTAGAGAAGTATGGGCTAAAACCCGAGCATTCATTTGAAGAAGATTATGCATCTTGTCAAATGGCTATTATGCCAAAGAGTTTCTTTGAGGAAGCAGATAAAGGGAAGATTGTGTTTAAAAGACGAAAAAATGGTGGTTTTGGAGTGGTGGAGTTGAATTTGGCGAAGAAGATAACAACAGTACTAAATTAG 1146 45.46 MAAAAVTTAEQSRHRSLSKVGIIGAGISGIAAAKHLSSHHPVVFEATDSIGGVWKHCAYRTTRLQTPRRDFEFSDYQWPPQTTGSDEFPTYLEVLDYLHGYATHFDVLKFVKFNSKVVQLRYIGGPEAEDSTVTGVYGSLLNGRPVWEVAVQDTQLNTIQWYEFELVVICVGRYGDIPNIPIFPHNKGQEVFKGKVLHSMDYAKLNHDDAHALLHNKRVIVVGYRKSAIDLAVECAEANQGPEGKACTMVIRSLHWTVPSYRIWGLPFFLFYSTRFSQFLQETPNQGLLKSIFCSLFSPMIRKIISKFIESYLTWKLPLEKYGLKPEHSFEEDYASCQMAIMPKSFFEEADKGKIVFKRRKNGGFGVVELNLAKKITTVLN 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6179706 6183841 + PI0007278.1 Cmetu03g0531 350675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0531 381 FunFam Flavin-containing monooxygenase 17 286 - -
Cmetu03g0531 381 Pfam Flavin-binding monooxygenase-like 19 291 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cmetu03g0531 381 SUPERFAMILY FAD/NAD(P)-binding domain 19 277 IPR036188 -
Cmetu03g0531 381 Gene3D - 14 287 IPR036188 -
Cmetu03g0531 381 PANTHER DIMETHYLANILINE MONOOXYGENASE 19 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0531 K00485 - - csv:101205746 687.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1076 Cmetu-Chr2:2839272 Cmetu03g0531 Cmetu-Chr3:6179706 1.10E-129 dispersed
Cmetu03g0531 Cmetu-Chr3:6179706 Cmetu11g2380 Cmetu-Chr11:13809223 3.20E-78 dispersed
Cmetu03g0531 Cmetu-Chr3:6179706 Cmetu11g1705 Cmetu-Chr11:16579773 3.60E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g187 . . . . . Bpe02g00314 . . . . . . . . . . . Bhi04g01538 Tan02g1562 Cmetu03g0531 . Hepe08g1457 . Lcy13g2236 . . . . . . . Cone4ag1711 Cone7ag1629 . . . . . . Blo17g00265 . . . Bpe14g00290 . . Bma02g00330 . . . . . . . . . . . . . . . . Cla08g00973 Cam08g1422 Cec08g1001 Cco08g1124 Clacu08g1126 . Cre08g0910 Lsi08g00821 . Chy03g00644 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002096 2 2 3 2 3 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 3 2 2 2 2 63