Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0539 ATGAGCTGTGGGGAATTACAGTCGTTGAGTTTGTCGATGAGTCCAGGTTCTCAATCGAGCTCGTTCACGACTTCCGGCCAGATCTCCCCTACTGGAGGCGACGGCGCCGCCGTTGAAACTAAAAAAAGAGGCCCCGGAAAACTCTGCCAGAAACAACCCGTTCATCGTAAATCCATCGATACTTTTGGCCAAAGAACCTCCCAATATCGTGGCGTCACCAGACATAGATGGACGGGAAGATACGAAGCTCATCTGTGGGATAACAGTTGCAAGAAAGAAGGGCAGACCAGAAAAGGAAGACAAGGTTTGTAA 312 49.68 MSCGELQSLSLSMSPGSQSSSFTTSGQISPTGGDGAAVETKKRGPGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGL 103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 838089 838554 - PI0020209.1 Cmetu03g0539 350683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0539 103 ProSiteProfiles AP2/ERF domain profile. 68 103 IPR001471 GO:0003700|GO:0006355
Cmetu03g0539 103 Gene3D AP2/ERF domain 67 102 IPR036955 GO:0003700|GO:0006355
Cmetu03g0539 103 MobiDBLite consensus disorder prediction 1 31 - -
Cmetu03g0539 103 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 27 101 - -
Cmetu03g0539 103 MobiDBLite consensus disorder prediction 1 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0539 K09285 - - csv:101212797 183.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0539 Cmetu-Chr3:838089 Cmetu08g2052 Cmetu-Chr8:20419984 2.00E-35 dispersed
Cmetu03g0316 Cmetu-Chr3:833083 Cmetu03g0539 Cmetu-Chr3:838089 2.60E-53 tandem
Cmetu03g0539 Cmetu-Chr3:838089 Cmetu03g1457 Cmetu-Chr3:840075 9.70E-54 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g608 Blo01g01486 . Bda01g00600 Bda03g00160 . . . . Cmo05g00125 Cmo12g00550 . . Car01g01376 . Sed10g1152 . . Bhi04g00456 Tan02g1691 Cmetu03g0539 . Hepe08g1355 . Lcy13g2154 . . . . . . . . . . . Lsi04g01456 . . . . . . . . . . . . Cmo01g01825 Cmo09g00310 . Cma05g00122 Car05g00104 Car09g00261 Cpe11g00106 . Bhi09g03196 . . . . . . . . . . . . . Lsi08g01547 Csa02g01870 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000570 3 7 3 2 2 3 6 3 3 3 3 3 6 3 5 5 3 3 6 3 3 3 3 3 3 3 3 5 4 1 106
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7534 PF00847 AP2 0.00027 CL0081 Cmetu TF