Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0544 ATGGAGGAAGAGGAATCCGGCGAGGCTATCCGGCCGGAATTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGACATCGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTCTCATGCGCCACCGAACTCTTCCTTAAGCTTCTAGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATGGCCGTCAAAAGGCGTCGCTCGATCAGTGATTTTCTTCTCGATTCGCTTCCTCTACCGTCTCAGCCGTCGGATGCACCGGCGAAGGACGAGAATCGCACTCGCGCTGTCGTTGATAAAGTGGCTCCTGAAGGAACGCGTCGAATCGATGATTTCTTTCGTCGGCCAACTAAGACAACGTCGGCGGAGACCAACGAGTCATAG 423 52.25 MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRRRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTRRIDDFFRRPTKTTSAETNES 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5849852 5850274 - PI0021134.1 Cmetu03g0544 350688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0544 140 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982
Cmetu03g0544 140 MobiDBLite consensus disorder prediction 120 140 - -
Cmetu03g0544 140 SUPERFAMILY Histone-fold 12 90 IPR009072 GO:0046982
Cmetu03g0544 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 104 - -
Cmetu03g0544 140 MobiDBLite consensus disorder prediction 88 107 - -
Cmetu03g0544 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0544 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g0400 . 35 180 CCAAT-HAP5 Transcription Factor Family AT3G48590 92.6 1.2e-70 263.5
Cmetu02g2020 . 82 249 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.9 2.9e-53 205.7
Cmetu01g1692 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 8.4e-53 204.1
Cmetu02g2020 . 1 259 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.8 7.3e-57 217.6
Cmetu01g1692 . 22 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 7.3e-49 191.0
Cmetu02g0400 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.0 3.9e-42 168.7
Cmetu02g2020 . 23 249 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 6.0e-61 231.1
Cmetu01g1692 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.3e-52 202.6
Cmetu02g0400 . 34 180 CCAAT-HAP5 Transcription Factor Family AT1G54830 69.8 2.1e-50 196.1
Cmetu02g0400 . 35 181 CCAAT-HAP5 Transcription Factor Family AT5G63470 82.4 1.5e-63 240.0
Cmetu02g2020 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.8 7.1e-50 194.5
Cmetu01g1692 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.1e-49 193.0
Cmetu01g1692 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 2.4e-64 242.3
Cmetu02g2020 . 54 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.1 7.4e-50 194.1
Cmetu02g0400 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.0 2.2e-49 192.6
Cmetu03g0544 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.3 3.6e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009175 3 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7535 PF00808 CBFD_NFYB_HMF 2.30E-20 CL0012 Cmetu TF