Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0561 ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCGACATTCAACCCCGAACTCTCCCCGGAAACCTTATCCAACCGCAGACTTTGTAGTCTCAACTTCTATCGCCCACTCCTCACTCTCACTACTACACGCAAACCTTCTCCAAAATGCCAATACTCCTGGAACACGCAGCAGCACCAACAATCGGCATACGAACCGGCCTCTCAGACCGATTCCTTTTCCTCACAGTCTCGCGCCGGAGCTGCTGCTGCATTGCCTCCGAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGAGCGTTCAAAATATCCAAGGAAGGATTTGTTATGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCGGTGACAGAATTGGGAAGTCTAATTGCCCTTGGTCCACGCGAGTCTTCTGAATTTTTTCACGACCCCTATAAGGGAAGAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGTCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTGGACGAGAGCATTTATATTCCTATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGTACCTCATGGGTTGGCATACGATTGCAAACACCATGACGAAGCCTGAAGATAGCAGCCGAGGAAATACCGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG 822 46.84 MLRLQWLSSSLLPTFNPELSPETLSNRRLCSLNFYRPLLTLTTTRKPSPKCQYSWNTQQHQQSAYEPASQTDSFSSQSRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISKEGFVMLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGPRESSEFFHDPYKGRSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPYLMGWHTIANTMTKPEDSSRGNTANPRYGGDFEWNR 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6844836 6848266 + PI0013728.1 Cmetu03g0561 350705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0561 273 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 52 273 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cmetu03g0561 273 Gene3D Transcriptional Coactivator Pc4; Chain A 81 254 IPR009044 GO:0003677|GO:0006355
Cmetu03g0561 273 Pfam Whirly transcription factor 96 230 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cmetu03g0561 273 SUPERFAMILY ssDNA-binding transcriptional regulator domain 88 273 IPR009044 GO:0003677|GO:0006355
Cmetu03g0561 273 MobiDBLite consensus disorder prediction 251 273 - -
Cmetu03g0561 273 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 81 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0561 K26559 - - csv:101203474 510.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0561 Cmetu-Chr3:6844836 Cmetu09g1050 Cmetu-Chr9:20917206 1.90E-40 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0561 . 46 273 Whirly Transcription Factor Family AT1G14410 69.3 6.7e-91 330.9
Cmetu09g1050 . 63 221 Whirly Transcription Factor Family AT1G14410 50.9 3.1e-43 172.6
Cmetu09g1050 . 18 246 Whirly Transcription Factor Family AT1G71260 51.3 6.1e-59 224.6
Cmetu03g0561 . 49 273 Whirly Transcription Factor Family AT2G02740 67.7 3.5e-87 318.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7540 PF08536 Whirly 1.30E-59 CL0609 Cmetu TF