Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0605 ATGTACGCACGCGCTCAACCCTTGACCATGGGCGACCAGATCGCCGACTGTGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATATGGAGCTCACTCTCTTGAAGACGGTGGTGTAGTAGGCGGTATGGTCGAGGTTCTCAACCCTGATGCTGTTTATGTTCCCGCCGGTGATGGGTCGGACTTGGCTGTTCAGCGCAGTGATGGTTCGAATCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGACGCTGTCTCTCCTGAGAAGGTTCAAGCAGTGTTATTGTTGTTGGGTGGTTGCGAATTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAAATCAAAACCAGAGGAATGCTTTGGACTTCCCTGGACGGAGTAGTCAACCTCAGAGGGCAGCCTCGTTAAATCGGTTTCGGCAGAAAAGGAAAGAGCGATGTTTCGAAAAGAAAGTTAGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCAGATGGTTCGTATAGCCATGGCAATGTCTCAGAGTTAGGTCAAGATGAAAGTCCCCCGGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGTCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCGTGCGGGCTCTTTTGGGCAAACAGGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAGGACCATCCGGTGACCCCGGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCGGACATGATAACCATGCGCCAAGCAATCTCGTTTCTTTCTCAAACGGTGATAACTCTGCTTTAATGGCTGAGCATTAG 882 50.0 MYARAQPLTMGDQIADCGDSGEPLDNRLVRYGAHSLEDGGVVGGMVEVLNPDAVYVPAGDGSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNALDFPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHGNVSELGQDESPPETSCTNCGISSMSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCGHDNHAPSNLVSFSNGDNSALMAEH 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2904005 2910997 - PI0025356.1 Cmetu03g0605 350749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0605 293 CDD ZnF_GATA 202 249 IPR000679 GO:0006355|GO:0043565
Cmetu03g0605 293 SMART tify_2 68 103 IPR010399 -
Cmetu03g0605 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 247 - -
Cmetu03g0605 293 Gene3D - 193 253 IPR013088 GO:0006355|GO:0008270
Cmetu03g0605 293 PANTHER GATA TRANSCRIPTION FACTOR 28 34 260 IPR045280 GO:0006355
Cmetu03g0605 293 Pfam CCT motif 135 177 IPR010402 GO:0005515
Cmetu03g0605 293 MobiDBLite consensus disorder prediction 168 206 - -
Cmetu03g0605 293 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355|GO:0043565
Cmetu03g0605 293 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515
Cmetu03g0605 293 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355|GO:0043565
Cmetu03g0605 293 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Cmetu03g0605 293 Pfam tify domain 70 102 IPR010399 -
Cmetu03g0605 293 SMART GATA_3 197 250 IPR000679 GO:0006355|GO:0043565
Cmetu03g0605 293 ProSiteProfiles GATA-type zinc finger domain profile. 197 256 IPR000679 GO:0006355|GO:0043565
Cmetu03g0605 293 MobiDBLite consensus disorder prediction 244 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0605 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0685 Cmetu-Chr1:1709733 Cmetu03g0605 Cmetu-Chr3:2904005 3.60E-62 dispersed
Cmetu03g0605 Cmetu-Chr3:2904005 Cmetu08g0676 Cmetu-Chr8:16470263 3.30E-06 dispersed
Cmetu03g0931 Cmetu-Chr3:2895263 Cmetu03g0605 Cmetu-Chr3:2904005 9.40E-48 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g2498 . 1 230 Tify Gene Family AT3G21175 56.5 7.3e-59 224.2
Cmetu03g0605 . 45 293 Tify Gene Family AT4G24470 54.1 1.9e-71 266.5
Cmetu01g0685 . 89 298 Tify Gene Family AT4G24470 53.7 1.3e-48 190.7
Cmetu01g2498 . 1 290 Tify Gene Family AT1G51600 59.4 2.3e-87 319.3
Cmetu01g0685 . 86 300 Tify Gene Family AT1G51600 55.2 1.9e-52 203.4
Cmetu03g0931 . 71 246 Tify Gene Family AT1G51600 59.0 6.0e-51 198.4
Cmetu03g0605 . 38 247 Tify Gene Family AT1G51600 52.4 4.0e-47 185.7
Cmetu03g0605 . 45 293 Tify Gene Family AT4G24470 54.1 1.9e-71 266.5
Cmetu01g0685 . 89 298 Tify Gene Family AT4G24470 53.7 1.3e-48 190.7
Cmetu01g2498 . 1 290 Tify Gene Family AT1G51600 59.4 2.3e-87 319.3
Cmetu01g0685 . 86 300 Tify Gene Family AT1G51600 55.2 1.9e-52 203.4
Cmetu03g0931 . 71 246 Tify Gene Family AT1G51600 59.0 6.0e-51 198.4
Cmetu03g0605 . 38 247 Tify Gene Family AT1G51600 52.4 4.0e-47 185.7
Cmetu01g2498 . 1 230 Tify Gene Family AT3G21175 56.5 7.3e-59 224.2
Cmetu05g1474 . 1 180 Tify Gene Family AT4G14713 52.1 1.9e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7543 PF06203 CCT 5.60E-15 CL0281 Cmetu TF