Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0637 ATGGCGGATCTCTACGGAACTTCCCCTTCTTCCGATGTTGTGGGTTTGCCCCATGACCCTGAAGATTTCTCTTCTTTCATCAATCACCACCTTCAAACCACTACTTCTGCTTCTTCTCCTTCTTGCGTTTCCTTCAAGAACAAGTTCATGCCCTTGTTGCATTCTCAACCTCCTTGGCACTCTTCGCCGATGTTTTCTCGCCGGCCGGATTCCACCTCTGTTCCCGGTATGTCCTGCATGCTCGATTTTCCCGAGGATCGGCTTCAGTCCAGTCGTGTTTTGAACCACGCTTTGTCGGATTGTAGTGTTAGGGATGTGAGATTTGCTGATGCTTCGTTTTTGGCTGTGAACTCAACTTGCGGCGGCGTGAAATTGTCGGATCCTGGTGATTTTGTCAAAGAAAGTTCCGACAACGCCTTTTCTTCCTCCGGCGCTGTTGATTCCGATACGAATGCACCGTTGAAGAGAAGGGGTCTTTCGTCTGAAAATGATCTTGGGGATTTCAGTTGCGATAGCGAGGGTGGGGATTTGCCTGAAGTTCCATCCAGTACTGATCTGCCTCGAAATTCATCGAAGAGAAGTAGAAGCGCTGAGGTCCATAATATGTCGGAGAAGAGACGAAGGAGGAGGATCAATGAGAAAATGAAAGCCCTTCAGAACTTAATTCCCAATTCAAACAAGACGGACAAAGCTTCAATGTTGGATGAAGCAATTGAGTATTTGAAGCAGCTTCAACTTCAAGTCCAGATGTTATCAATGAGAAATGGCTTGAGTTTGCAACCAATGTGCTTGCCAGGAATGCTGCAGCCAATTCAACTACCTCAGATGGGGTTGGACTTTGACGTAGGAAATGCATTTCTAACATCCCGAAGAGGAATAGACACATCGTCTACTAGGAACGATGGATGTCCCATGCAATCTACATTCAATCTTACCAACAAATGTAACCTTTCAGATCAGTCAATTGCCATCCCTTCCGTACCAAAGACCACAGCCTCAGAAACGGCATTCAGTTTTGAACCCACGATTCAGGGCTACGATGGGGAGTTCAACCTTTCCTCCGATTTCAAGGATGGCGAACCAGCCGCACAGTTAGATTGCGCTCAAGCGGGGAAGGAGTCAACAGACGCTTCTTAG 1137 47.14 MADLYGTSPSSDVVGLPHDPEDFSSFINHHLQTTTSASSPSCVSFKNKFMPLLHSQPPWHSSPMFSRRPDSTSVPGMSCMLDFPEDRLQSSRVLNHALSDCSVRDVRFADASFLAVNSTCGGVKLSDPGDFVKESSDNAFSSSGAVDSDTNAPLKRRGLSSENDLGDFSCDSEGGDLPEVPSSTDLPRNSSKRSRSAEVHNMSEKRRRRRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLQPMCLPGMLQPIQLPQMGLDFDVGNAFLTSRRGIDTSSTRNDGCPMQSTFNLTNKCNLSDQSIAIPSVPKTTASETAFSFEPTIQGYDGEFNLSSDFKDGEPAAQLDCAQAGKESTDAS 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1234709 1238130 + PI0019522.1 Cmetu03g0637 350781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0637 378 FunFam Basic helix-loop-helix transcription factor 190 253 - -
Cmetu03g0637 378 MobiDBLite consensus disorder prediction 191 208 - -
Cmetu03g0637 378 MobiDBLite consensus disorder prediction 136 210 - -
Cmetu03g0637 378 Coils Coil 234 254 - -
Cmetu03g0637 378 Pfam Helix-loop-helix DNA-binding domain 199 245 IPR011598 GO:0046983
Cmetu03g0637 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Cmetu03g0637 378 CDD bHLH_AtPIF_like 195 257 IPR047265 -
Cmetu03g0637 378 SMART finulus 201 250 IPR011598 GO:0046983
Cmetu03g0637 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 255 IPR036638 GO:0046983
Cmetu03g0637 378 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 55 358 IPR031066 -
Cmetu03g0637 378 MobiDBLite consensus disorder prediction 136 157 - -
Cmetu03g0637 378 Coils Coil 201 221 - -
Cmetu03g0637 378 Gene3D - 190 254 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0637 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0637 Cmetu-Chr3:1234709 Cmetu05g1108 Cmetu-Chr5:4250752 3.50E-24 dispersed
Cmetu05g1643 Cmetu-Chr5:20075395 Cmetu03g0637 Cmetu-Chr3:1234709 4.60E-07 dispersed
Cmetu03g0637 Cmetu-Chr3:1234709 Cmetu03g0536 Cmetu-Chr3:1285179 7.00E-07 proximal
Cmetu12g0478 Cmetu-Chr12:636388 Cmetu03g0637 Cmetu-Chr3:1234709 6.10E-20 transposed
Cmetu03g0637 Cmetu-Chr3:1234709 Cmetu08g0163 Cmetu-Chr8:19714895 4.40E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g744 . . . . . . . . Cmo05g00172 Cmo12g00502 . . . Car12g00514 Sed10g1234 . Cpe07g00491 Bhi04g00369 Tan02g1798 Cmetu03g0637 . Hepe08g1296 . Lcy13g2092 . . . . . . . Cone4ag1587 Cone7ag1362 . . . . . Cme03g02063 Blo17g00875 . . . . . . Bma05g00041 . . . Cma12g00559 Cma05g00174 Car05g00147 . Cpe11g00143 . . . . . . . . . . . . . . . . Csa02g01934 Chy03g01556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007940 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7546 PF00010 HLH 2.30E-14 No_clan Cmetu TF