Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0638 ATGGCAGAAAGTAGAAGAAAGAAGCTTAATGAAGCCGCCATTGAAGGAAACGTAACAACCCTGTTAGAGTTACTCCGACAAGATCCATTGTTATTAACTAGACTCAGTTACCTCAACGACTTTAAGGAGACTCCACTGCACGTGGCTTCTCTTCTTGGTCACCTGACATTTGTTCATGAGCTTCTCAAGCGAAGCCCTCGGCTGGCCAAGGAGTTGGATTCTCGCCGTTGTTCCGCCCTCCATTTTGCCGCCGCCGAGGGCTTTTTAGACATTGTCAAGATTCTGGTGCGAGTTGATCCTGATATGTGTTCTATATGCAATCAAGATGGCATGAACCCTATTCATCTCGCCGCCGTGAGGGGCCGGGTTGATGTCTTGGCTGAGCTTGTTCGAGTCAGACCCCTAGCCGCTCGAACTGCCGTGGACGGCGGTGGAACGGTGTTGCATTTGTGTGTTAAGTATAATCAGCTTGAGACTCTGAAGATGTTGATTGAAACTATTGGAGTGAAAGACAAAGACAATGGGTTTATTAATAGTCAAGATGATTATGGGTTCACTATCCTTCATTTAGCAGTCTCCAACAAACAACTTCAGACTGTGGAATATCTAATCAACAACAATACAAAAATCCAAGTAAATGCAAAAACCTCAAATGGGTTAACAGCTCTTGACATTCTATCTCAAAGCCATAGAGATTTAAAGGACATGGACATTGCAGAGACTCTCACCGCCGCCAAAGCCGTCCGAACCACAAACAAAAAACCGCCGTCGTCATCGTCTTCTTCTTGTGTCGAGAAAAGCAAAAAGACAGGGTTTAGATGGGCTTTTTCAGCTTTATTCCACGGTGGCGATTGGTGGTTTACGAACGAAAAAAGCGAGTGGCTAATGAAGCAAGAATCACTAATGGTTGTAGCATCTCTAATTGCAACAATGGCTTTTCAAGCCGGTATGAACCCTCCCGGTGGCGTTTGGCAAGCTGATAATCCGGATACCCAACAGATAGCTGGAATGTCGGTAATGGCGGGAAAAGATGAAAAAACATACAAGAAGTATCTTGTGGCTAACACAATTGGGTTCATGACTTCGTTCATTGCAATTGTGATGATTCTTATTGGGTTGCCTAAGAAACGTATTTTCATGAGGTTTTTGATTATGAAAATGTGTGCTGCTGTGTGTTCCATGGCTTTCACTTATGGATATTCCATAAGGTTTTTCACTCCATTACCACCCCATTCTCCTGCACCCTCTCCACAACCTGTTAGAGGTTTCGTTACCAATGCTGAACGGCCGAACTCCGTCATCTCTTCGATTTCGGTGATTGTTGCTATAGTGGTGACTTCTTCCATGGGGGTTTTCTTGATCGGGAAGCTCTTTTACGTTCATTCTCGACAAAATAAATCTACTAAACACCCTGATCCGCCGCTATGA 1428 44.4 MAESRRKKLNEAAIEGNVTTLLELLRQDPLLLTRLSYLNDFKETPLHVASLLGHLTFVHELLKRSPRLAKELDSRRCSALHFAAAEGFLDIVKILVRVDPDMCSICNQDGMNPIHLAAVRGRVDVLAELVRVRPLAARTAVDGGGTVLHLCVKYNQLETLKMLIETIGVKDKDNGFINSQDDYGFTILHLAVSNKQLQTVEYLINNNTKIQVNAKTSNGLTALDILSQSHRDLKDMDIAETLTAAKAVRTTNKKPPSSSSSSCVEKSKKTGFRWAFSALFHGGDWWFTNEKSEWLMKQESLMVVASLIATMAFQAGMNPPGGVWQADNPDTQQIAGMSVMAGKDEKTYKKYLVANTIGFMTSFIAIVMILIGLPKKRIFMRFLIMKMCAAVCSMAFTYGYSIRFFTPLPPHSPAPSPQPVRGFVTNAERPNSVISSISVIVAIVVTSSMGVFLIGKLFYVHSRQNKSTKHPDPPL 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5946506 5948261 + PI0017027.1 Cmetu03g0638 350782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0638 475 PANTHER HOMEOBOX PROTEIN WARIAI 16 412 - -
Cmetu03g0638 475 SMART ANK_2a 143 172 IPR002110 GO:0005515
Cmetu03g0638 475 SMART ANK_2a 218 253 IPR002110 GO:0005515
Cmetu03g0638 475 SMART ANK_2a 183 212 IPR002110 GO:0005515
Cmetu03g0638 475 SMART ANK_2a 75 104 IPR002110 GO:0005515
Cmetu03g0638 475 SMART ANK_2a 41 70 IPR002110 GO:0005515
Cmetu03g0638 475 SMART ANK_2a 109 138 IPR002110 GO:0005515
Cmetu03g0638 475 Gene3D - 2 276 IPR036770 -
Cmetu03g0638 475 ProSiteProfiles Ankyrin repeat profile. 183 215 IPR002110 GO:0005515
Cmetu03g0638 475 Pfam Domain of unknown function 297 401 IPR026961 -
Cmetu03g0638 475 ProSiteProfiles Ankyrin repeat region circular profile. 109 131 - -
Cmetu03g0638 475 ProSiteProfiles Ankyrin repeat region circular profile. 183 212 - -
Cmetu03g0638 475 SUPERFAMILY Ankyrin repeat 9 229 IPR036770 -
Cmetu03g0638 475 Pfam Ankyrin repeats (3 copies) 80 167 IPR002110 GO:0005515
Cmetu03g0638 475 ProSiteProfiles Ankyrin repeat profile. 109 131 IPR002110 GO:0005515
Cmetu03g0638 475 Pfam Ankyrin repeats (many copies) 178 225 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0638 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0638 Cmetu-Chr3:5946506 Cmetu04g1675 Cmetu-Chr4:14137178 5.40E-14 dispersed
Cmetu03g0055 Cmetu-Chr3:5922765 Cmetu03g0638 Cmetu-Chr3:5946506 4.60E-06 proximal
Cmetu03g0638 Cmetu-Chr3:5946506 Cmetu03g1642 Cmetu-Chr3:5949803 9.40E-11 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g137 . . . . . . . . . . . . . . Sed08g1788 . . Bhi04g01497 Tan02g1599 Cmetu03g0638 . Hepe08g1418 . Lcy13g2206 . . . . . . . . . . . . . . . . Blo18g00266 . . . . . Bma02g00544 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00846 . Chy03g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58