Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0752 ATGACAAAGCTCGATGTTCAGTCCGCCTCTCAGGCTACCGGAGCAACCTCCGCCGCCTCCAAGCAGCCTGAGACAAAAGAAATTAAGCTATGGGGCGGCCGTTTCCAGGAGAGCGTAACAGACGCCGTAGAACGCTTTACAGAGTCGATTTCATATGATAAGGACCTTTACAAGCATGACATCCGTGGCAGTCGTGCTCATGCATCCATGCTCGCTAAGCAGGGATTGATGAGTATCAGTGACAGGGACAGTATTCTAGCAGGTCTCGATGAGATCGAGAGGCGTATTCGAAATGGCGAGTTCGTCTGGAGAGCTGACAGGGAAGATGTACATATGAACATTGAAGCTGCGCTTACTGATTTGATTGGCGAGCCTGCTAAGAAACTGCATACTGCTCGGAGCCGCAACGACCAGGTTGCGACTGATTTTCGCTTGTGGTGCCGAGATGCTATCGATTCAATAGTTGGGAGGATTAAAGATTTTCAAGTTGCAATGGTAGACTTGGCAGTCAAGAATGCAGGAATTATTGTGCCAGGTTATACACATTTGCAGAGAGCACAGCCCGTCCTACTTCAGCATCTTCTCTTAGCATTCGTTGAGCAGCTCAATAGGGATGCTGGTCGGTTGCTGGACTGCAGAGCTAGACTGAATTTCTGCCCATTAGGAGCTTGTGCTTTGGCTGGAACTGGCCTTCCAATTGATCGATTCATGACATCAAGTGCTTTAGAATTCTCATCTCCTTTGAGAAACAGTATTGATGCTGTTTCAGATCGAGATTTTGCAATGGAATTTCTTTCTGCCAACTCTATTATGGCTATTCATCTTTCTCGGCTGGGAGAGGAGTGGGTATTGTGGTCCTCTGAGGAGTTCGGATTTATCACACCTAATGACGCTGTTTCAACTGGAAGTAGCATAATGCCTCAGAAGAAAAATCCAGATCCAATGGAACTTGTTCGTGGAAAGTCAGCTAGAGTCATAGGTGATCTAGTAACCCTTCTAACATTGTGCAAAGGACTTCCTCTTGCATACAACCGTGATCTACAGGAAGATAAGGAACCTGTATTTGATAGTGTCAAGACAGTTTTAGGAATGCTTGAGGTTTCAGCTGAGTTTGCACGAAACATTAGCTTCAATCAGGATAGAATTAAGAAGGCCTTACCTGCGGGTCATCTTGATGCAACCACACTTGCTGACTATCTCGTGCATAAGGGAATACCTTTTAGAACATCTCATGATATTGTAGGCAAGTCTGTTGCTATGTGCCTTGGAAAGAACTGCCAGCTGAAGGACTTAAGTCTCGATGAACTACGAACTTTGAGTCCAATCTTTGACGACGATGTTTACGAATTTCTTGGCGTAGAAAATTCAGTTAACAAGTTTTCGTCGTATGGCTCCACGGGATCCGAATGTGTTGCTAATCAACTCCAGTATTGGATTGAAAAGCTCGGCCTTACTAGTCAGTAG 1464 45.42 MTKLDVQSASQATGATSAASKQPETKEIKLWGGRFQESVTDAVERFTESISYDKDLYKHDIRGSRAHASMLAKQGLMSISDRDSILAGLDEIERRIRNGEFVWRADREDVHMNIEAALTDLIGEPAKKLHTARSRNDQVATDFRLWCRDAIDSIVGRIKDFQVAMVDLAVKNAGIIVPGYTHLQRAQPVLLQHLLLAFVEQLNRDAGRLLDCRARLNFCPLGACALAGTGLPIDRFMTSSALEFSSPLRNSIDAVSDRDFAMEFLSANSIMAIHLSRLGEEWVLWSSEEFGFITPNDAVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPVFDSVKTVLGMLEVSAEFARNISFNQDRIKKALPAGHLDATTLADYLVHKGIPFRTSHDIVGKSVAMCLGKNCQLKDLSLDELRTLSPIFDDDVYEFLGVENSVNKFSSYGSTGSECVANQLQYWIEKLGLTSQ 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2948708 2953401 + PI0000145.1 Cmetu03g0752 350896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0752 487 Gene3D Fumarase/aspartase (Central domain) 146 475 - -
Cmetu03g0752 487 ProSitePatterns Fumarate lyases signature. 302 311 IPR020557 GO:0003824
Cmetu03g0752 487 PANTHER ARGININOSUCCINATE LYASE 9 485 IPR009049 GO:0004056|GO:0042450
Cmetu03g0752 487 Pfam Argininosuccinate lyase C-terminal 392 458 IPR029419 -
Cmetu03g0752 487 SUPERFAMILY L-aspartase-like 33 482 IPR008948 GO:0003824
Cmetu03g0752 487 MobiDBLite consensus disorder prediction 1 24 - -
Cmetu03g0752 487 CDD Argininosuccinate_lyase 49 482 IPR009049 GO:0004056|GO:0042450
Cmetu03g0752 487 Gene3D - 49 256 IPR024083 -
Cmetu03g0752 487 Pfam Lyase 33 327 IPR022761 -
Cmetu03g0752 487 NCBIfam argininosuccinate lyase 30 477 IPR009049 GO:0004056|GO:0042450
Cmetu03g0752 487 Hamap Argininosuccinate lyase [argH]. 29 480 IPR009049 GO:0004056|GO:0042450
Cmetu03g0752 487 PRINTS Argininosuccinate lyase family signature 128 150 - -
Cmetu03g0752 487 PRINTS Argininosuccinate lyase family signature 220 236 - -
Cmetu03g0752 487 PRINTS Argininosuccinate lyase family signature 302 318 - -
Cmetu03g0752 487 PRINTS Argininosuccinate lyase family signature 337 356 - -
Cmetu03g0752 487 PRINTS Argininosuccinate lyase family signature 169 189 - -
Cmetu03g0752 487 PRINTS Argininosuccinate lyase family signature 258 282 - -
Cmetu03g0752 487 Gene3D - 387 459 - -
Cmetu03g0752 487 FunFam Argininosuccinate lyase 388 459 - -
Cmetu03g0752 487 MobiDBLite consensus disorder prediction 1 23 - -
Cmetu03g0752 487 FunFam Argininosuccinate lyase 49 149 - -
Cmetu03g0752 487 FunFam Argininosuccinate lyase chloroplastic 256 414 - -
Cmetu03g0752 487 PRINTS Fumarate lyase superfamily signature 129 147 IPR000362 -
Cmetu03g0752 487 PRINTS Fumarate lyase superfamily signature 174 192 IPR000362 -
Cmetu03g0752 487 PRINTS Fumarate lyase superfamily signature 258 285 IPR000362 -
Cmetu03g0752 487 PRINTS Fumarate lyase superfamily signature 302 318 IPR000362 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0752 K01755 - - csv:101213711 930.628
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0752 Cmetu-Chr3:2948708 Cmetu04g3041 Cmetu-Chr4:31492876 2.40E-219 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002720 2 2 1 3 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 54