Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0776 ATGAGAAGTAAAAACGACGAGGAAGAGGAGGAGGAAGATCGTTCGAGTAGGAAGCGGCGGAGATCAGATTTCATAGACGACGTTGCGGAGGAGGATGAGGATGAAGAGGAAGAAGAAGAGGATGAGGAGGAGGAGGAGGATTTTGGTGGCGGTGGTCGGAGGCGGCGTGCCAAGAGACCTAGCGGTTCTCAGTTTTTGGATATTGAGGCTGAGGTCGATAGCGATGATGATGAAGAGGATGATGAAGCTGAGGACGATTTCATAGTTGATAATGTAGCTGATATACCTGATGAAGATGATAATAGAAGGATGCATCGCCGCCCATTGCTACCACGGGAGGATGAACAAGAGGACGTTGAAGCACTTGAAAGAAGGATTCAAGCGAGATATGCAAGGTCAAATCATATGGAATATGACGAGGAGACGACAGAAGTGGAGCAGCAAGCCCTTTTACCTTCTATTGGCCGTGAACGGGAGGCTGCTGTTTGTCTAATGCAAAAGTGCATTGATAGGGGCCCTGAAATGCAAATAAGATCTGCAGTAGCTCTTGACCATTTGAAGAACTTTATATATATTGAAGCCGACAAAGAAGCCCATGTTAGAGAGGCTTGTAAAGGTCTACGCAATATATATGCTCAGAAAATAACGCTTGTTCCAATTAAGGAGATGACAGACGTTCTCTCTGTTGAAAGCAAAGCTATTGATCTTTCTAGGGATACATGGGTTAGGATGAAGATTGGGACATATAAGGGGGATCTTGCCAAGGTGGTGGATGTTGATAATGTACGGCAGAGGGTTACTGTGAAACTGATTCCACGGATAGACTTACAGGCTCTTGCTAATAAATTGGAAGGGAGAGAAGTTGCTAAGAAGAAGGCATTTGTTCCTCCACCTCGTTTTATGAATATTGATGAAGCTAGAGAATTACATATCCGCGTAGAGCGTAGACGCGATCCCATTACTGGAGAATACTTTGAGAATATTGGTGGCATGTTTTTCAAGGATGGTTTCTTGTATAAAACAGTGTCCATGAAATCAATAAGTGCTCAAAATATAAAGCCGACTTTCGATGAACTTGAAAAATTTCGAAAGCCTGGAGAGAATGGAGATGGGGATATTGCTAGTTTGTCTACCTTGTTTGCAAACCGAAAGAAAGGGCACTTTATGAAGGGATGGGTTGAGAAAGTAGAGGAAGAAAATGTCCACATCAGACCAGAAATGAAGGGCCTTCCTAAAACTCTTGCTGTGAATGAAAGAGAACTTTGCAAGTACTTTGAGCCTGGGAATCATGTAAAAGTTGTATCGGGCACTCAGGAGGGGGCAACTGGTATGGTTGTGAAGGTGGATCAGCACGTGCTTATTATACTATCTGATACAACCAAGGAACATATTCGGGTATTTGCTGATGATGTTGTTGAGAGCTCTGAGGTAACAACTGGTGTGACGAGAATTGGGGATTATGAACTTCATGATCTAGTGTTATTGGATAATATGAGCTTTGGTGTAATTATTCGTGTAGAAACGGAGGCTTTTCAGGTTCTTAAGGGTACTCCTGATAGGCCTGAGGTTGATATTGTGAAATTGAGGGAAATAAAAAGCAAGATAGACAAAAAAATCAGCGTTCAAGATCGATTTAATAATACAATATCCTCCAAGGACGTAGTGAGGATTCTTGAAGGTCCTTGTAAGGGAAAGCAAGGTCCTGTGGAACACATATACAGAGGAATCCTGTTTATTTATGATCGCCATCACTTGGAGCATGCAGGCTTTATATGTGCTAAATCACAATCTTGTGTTGTTGTGGGTGGATCCCGAACTAATGGAAATAGAAATGGTAATTCATACTCTAGGTTTGCTGGCATTGCGACCCCACCTCGTTTTCCTCAGTCTCCTAAGAGATTTTCCAGAGGAGGTCCTCCCAATGATAATGGGGGAAGACATAGAGGTGGGAGAGGGCATCATGATGGGTTGGTTGGATCAACAGTAAAAGTTCGACAGGGACCTTATAAGGGTTACCGTGGGCGTGTTGTTGAAATAAAAGGCCAACTGGTTCGAGTGGAGCTTGAATCTCAAATGAAAGTTGTCACAGTTGACCGCAATTTTATCTCGGATAACGTGGCCATTTCAACCCCCCATCGTGATGCATCTAGATATGGTATGGGAAGTGAAACTCCAATGCATCCTTCTCGAACTCCCCTGCATCCATACATGACGCCGATGAGAGATATTGGAACAACACCAATTCATGATGGCATGAGAACACCTATGCGAGATCGAGCTTGGAATCCCTATGCACCCATGAGTCCGTCAAGGGATAACTGGGAGGAAGGGAATCCTGCAACTTGGGGAGCGAGTCCACAGTACCAGCCAGGAAGTCCTCCTTCACGAACATACGAAGCTCCAACTCCTGGTTCTGGTTGGGCAAATACTCCTGGTGGCAGTTACAGTGATGCTGGTACCCCCCGTGATAGTGGTTCAGCCTATGCAAATGCTCCGAGCCCATACTTGCCTTCAACCCCTGGTGGACAGCCCATGACACCAAATTCAGCCTCCTATCTTCCTGGCACTCCCGGCGGGCAACCAATGACACCAGGCACAGGTGGTCTGGATATGATGTCTCCTGTTATAGGTGGTGATACCGAAGGGCCATGGTACATGCCAGACATATTAGTCAATTACCGTAGGTCAGGAGATGATCCCATCATGGGAGTAATTCGGGAGGTGCTTCCGGATGGCTCGTGTAGGATAGGGCTTGGGTCAAGTGGAAATGGTGAAACGGTAACAGCTCCTTCTAGCGAAGTAGAAGTGATTGTTCCTAGAAAGTCGGACAAGATCAAGATAATGGGTGGTGCTTTGCGTGGTGCCACTGGCAAGTTGATCGGTGTAGACGGTACCGATGGAATTGTGAAGGTAGACGACACTCTTGATGTTAAGATTTTGGATTTAGTTATTCTTGCTAAACTTGCTCAACCATAA 2976 45.06 MRSKNDEEEEEEDRSSRKRRRSDFIDDVAEEDEDEEEEEEDEEEEEDFGGGGRRRRAKRPSGSQFLDIEAEVDSDDDEEDDEAEDDFIVDNVADIPDEDDNRRMHRRPLLPREDEQEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSIGREREAAVCLMQKCIDRGPEMQIRSAVALDHLKNFIYIEADKEAHVREACKGLRNIYAQKITLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFENIGGMFFKDGFLYKTVSMKSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVDQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNMSFGVIIRVETEAFQVLKGTPDRPEVDIVKLREIKSKIDKKISVQDRFNNTISSKDVVRILEGPCKGKQGPVEHIYRGILFIYDRHHLEHAGFICAKSQSCVVVGGSRTNGNRNGNSYSRFAGIATPPRFPQSPKRFSRGGPPNDNGGRHRGGRGHHDGLVGSTVKVRQGPYKGYRGRVVEIKGQLVRVELESQMKVVTVDRNFISDNVAISTPHRDASRYGMGSETPMHPSRTPLHPYMTPMRDIGTTPIHDGMRTPMRDRAWNPYAPMSPSRDNWEEGNPATWGASPQYQPGSPPSRTYEAPTPGSGWANTPGGSYSDAGTPRDSGSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVIGGDTEGPWYMPDILVNYRRSGDDPIMGVIREVLPDGSCRIGLGSSGNGETVTAPSSEVEVIVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10125706 10135626 - PI0004812.1 Cmetu03g0776 350920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0776 991 Gene3D - 427 476 IPR014722 -
Cmetu03g0776 991 Gene3D - 641 705 IPR014722 -
Cmetu03g0776 991 Gene3D - 388 424 IPR014722 -
Cmetu03g0776 991 SMART kow_9 548 575 IPR005824 -
Cmetu03g0776 991 SMART kow_9 235 262 IPR005824 -
Cmetu03g0776 991 SMART kow_9 938 965 IPR005824 -
Cmetu03g0776 991 SMART kow_9 424 451 IPR005824 -
Cmetu03g0776 991 SMART kow_9 655 682 IPR005824 -
Cmetu03g0776 991 MobiDBLite consensus disorder prediction 27 47 - -
Cmetu03g0776 991 Coils Coil 112 132 - -
Cmetu03g0776 991 Gene3D - 152 237 IPR036735 GO:0006355
Cmetu03g0776 991 MobiDBLite consensus disorder prediction 611 659 - -
Cmetu03g0776 991 MobiDBLite consensus disorder prediction 1 108 - -
Cmetu03g0776 991 MobiDBLite consensus disorder prediction 842 856 - -
Cmetu03g0776 991 FunFam Transcription elongation factor SPT5 641 705 - -
Cmetu03g0776 991 FunFam Transcription elongation factor SPT5 235 277 - -
Cmetu03g0776 991 MobiDBLite consensus disorder prediction 69 94 - -
Cmetu03g0776 991 Coils Coil 25 46 - -
Cmetu03g0776 991 PIRSF Spt5 1 991 IPR017071 GO:0006357|GO:0032784
Cmetu03g0776 991 CDD KOW_Spt5_4 552 594 IPR041977 -
Cmetu03g0776 991 FunFam Transcription elongation factor SPT5 427 476 - -
Cmetu03g0776 991 Pfam Spt5 transcription elongation factor, acidic N-terminal 65 152 IPR022581 -
Cmetu03g0776 991 CDD NGN_Euk 154 228 IPR039385 -
Cmetu03g0776 991 CDD KOW_Spt5_5 655 703 IPR041978 -
Cmetu03g0776 991 MobiDBLite consensus disorder prediction 780 833 - -
Cmetu03g0776 991 CDD KOW_Spt5_6 932 989 IPR041980 -
Cmetu03g0776 991 MobiDBLite consensus disorder prediction 712 866 - -
Cmetu03g0776 991 Pfam KOW motif 427 454 IPR005824 -
Cmetu03g0776 991 Pfam KOW motif 658 688 IPR005824 -
Cmetu03g0776 991 Pfam Early transcription elongation factor of RNA pol II, NGN section 154 227 IPR005100 -
Cmetu03g0776 991 CDD KOW_Spt5_3 424 474 IPR041976 -
Cmetu03g0776 991 CDD KOW_Spt5_1 239 276 IPR041973 -
Cmetu03g0776 991 PANTHER SUPPRESSOR OF TY 5 43 968 IPR039659 GO:0006357|GO:0032784
Cmetu03g0776 991 MobiDBLite consensus disorder prediction 1 26 - -
Cmetu03g0776 991 Gene3D - 238 277 IPR014722 -
Cmetu03g0776 991 SMART nusgn_4 149 230 IPR006645 GO:0140673
Cmetu03g0776 991 SUPERFAMILY Translation proteins SH3-like domain 416 475 IPR008991 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0776 K15172 - - csv:101204562 1810.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0776 Cmetu-Chr3:10125706 Cmetu03g0871 Cmetu-Chr3:7279380 3.00E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39