Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0795 ATGAACCTCTCGTCTTTTTTCGCTCTTCCATTTCTCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACCTCGTTTCCGCCTGTCATGTCGCCGACCAGAAAGCTCTTCTTTCTTTCAAGTCCGCCATTACTGCCGACCCCTCCGGCATTTTATCCTCATGGAAGCCCGGCGCCGACTGCTGTACTTGGGCCGGAGTCACTTGCTCCGTCCCCAATCGCGTCACCAGTCTCAGCCTCTACGGCCAACTAGACCGCCCCAACGCCTTTCTCTCCGGCACCATCTCCAACTCCCTCTCCAACCTCCCTTACTTGGACGGAATCTACTTTGTTAACCTTCGTAACATTTCAGGCCCTTTTCCACTTTCCCTCTTCAAACTCCGTAAACTCCTCTTCGTCTACATCGAGAACAACAAGCTTTCAGGTCAATTACCGGCCGCAATCGGAAATATGAGCCAACTCGAAGCATTCAGCGTTGAAGGTAACAGATTCACTGGTCCGATCCCCAGTTCGATTTCCAAATTGACTCGCCTCAGTCAGCTTAAACTTGGTAGCAACCTTCTCACTGGATCCATACCCATTGGAATCAAGCAACTCAAAAGTCTGACATTCCTCAGCCTCGAACGGAATCTATTCACTGGTGCTGTTCCGGATATTTGGCGATCGTTTCCGGAGTTGAGGATTCTCAGACTTTCACACAATAAACTCACCGGCAAAATTCCGCGTTCAATTTCATCTCTGGCTCCGAAGCTTAATTATCTAGAGTTAGGGCACAATTTGATAACAGGTAATATTCCTGATTTTCTTGGAAATTTTAGGGCTCTGGATACACTCGATCTCTCATCCAATTACATCTCTGGAGTTGTGCCGAAAAGCTTCAGGAATTTAACGAAAATATTCAATCTGGATCTGTCTCGGAATTCGCTGGTGGATCCGTTCCCGGAGTTGTTTGTGAAAGGGATTGAGTCGTTGGATTTGTCTTACAATAAATTTCATCTTGGGAAAATTCCGAATTGGGTGACGTCGTCGCCGATAATATACTCTCTGAAATTGGCGAAATGTGGGATCAAAATGAAGCTGGACGATTGGAAGCCGACTCAAACGTATTTCTACGATTACATTGATTTATCGAATAACGAGATTTGGGGGAGTCCGGTGGGATTGTTGAACCGGACGGATTACTTGGTCGGATTTTGGGGAGCCGGAAACAAGTTGAATTTTAAGTTGCAAGATTTGAGGATAGTGAAGAGCTTGAAGTACTTGGATTTGTCGAGAAATGTGGTGTCCGGTAAAGTACCAGGCGGGGTGGTGGGGCTGGAAAAATTGAATGTCAGCTACAATCATTTGTGTGGCCGTCTTCCGGCGACGAAGTTCCCGGCGACGTCGTTCGTGGGAAATGATTGCTTGTGTGGGCCGCCGCTGCCGGGCTGCAAATGA 1437 47.25 MNLSSFFALPFLLLFFFFFFFFFNLVSACHVADQKALLSFKSAITADPSGILSSWKPGADCCTWAGVTCSVPNRVTSLSLYGQLDRPNAFLSGTISNSLSNLPYLDGIYFVNLRNISGPFPLSLFKLRKLLFVYIENNKLSGQLPAAIGNMSQLEAFSVEGNRFTGPIPSSISKLTRLSQLKLGSNLLTGSIPIGIKQLKSLTFLSLERNLFTGAVPDIWRSFPELRILRLSHNKLTGKIPRSISSLAPKLNYLELGHNLITGNIPDFLGNFRALDTLDLSSNYISGVVPKSFRNLTKIFNLDLSRNSLVDPFPELFVKGIESLDLSYNKFHLGKIPNWVTSSPIIYSLKLAKCGIKMKLDDWKPTQTYFYDYIDLSNNEIWGSPVGLLNRTDYLVGFWGAGNKLNFKLQDLRIVKSLKYLDLSRNVVSGKVPGGVVGLEKLNVSYNHLCGRLPATKFPATSFVGNDCLCGPPLPGCK 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26118227 26120463 + PI0023575.1 Cmetu03g0795 350939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0795 478 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 90 477 - -
Cmetu03g0795 478 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 62 319 - -
Cmetu03g0795 478 SUPERFAMILY L domain-like 60 433 - -
Cmetu03g0795 478 Gene3D Ribonuclease Inhibitor 30 196 IPR032675 -
Cmetu03g0795 478 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Cmetu03g0795 478 SMART LRR_typ_2 199 222 IPR003591 -
Cmetu03g0795 478 SMART LRR_typ_2 223 247 IPR003591 -
Cmetu03g0795 478 SMART LRR_typ_2 127 151 IPR003591 -
Cmetu03g0795 478 SMART LRR_typ_2 436 465 IPR003591 -
Cmetu03g0795 478 SMART LRR_typ_2 272 295 IPR003591 -
Cmetu03g0795 478 Pfam Leucine Rich Repeat 226 247 IPR001611 GO:0005515
Cmetu03g0795 478 Gene3D Ribonuclease Inhibitor 201 478 IPR032675 -
Cmetu03g0795 478 Pfam Leucine rich repeat 249 309 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0795 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1691 . . . . . . . . . . . . . . Sed05g2505 . . Bhi04g02557 Tan11g0037 Cmetu03g0795 . Hepe02g3470 . Lcy10g2364 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00803 Cam11g0839 Cec11g0825 . Clacu11g1018 Cmu11g0881 Cre11g1284 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012402 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 0 1 1 26