Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0812 ATGGCGGCTCAAACCATGCTCCTCACTTCTGGTGTGTGCGTCGGCCATGGTGTGTGTCTCAAAAGAGAATTGAGCCTTAGACCGAACAACACCCAATTCACTCGTCTCTTTTTCAGTCCTCTGCCGTCCCACTCTGTTTCTTTGCCGGGGCGTGGTTTCACCACTCTTGCTGTGTTTAAATCCAGAACTAAAGCCCCGCCCAAGAAGGTTGAGAAGCCGAAGCAGAAGGTTGAAGATGGAATTTTTGGAACTTCTGGTGGCATTGGTTTTACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGCATCATTGCTAGGAGAGGGGATCACCGGAAAGGGAATTCTAGCACAACTCAACTTAGAAACTGGAATTCCCATTTACGAGGCCGAGCCTCTTCTTCTCTTCTTCATCTTATTCACTCTTCTCGGAGCCATCGGAGCCCTTGGAGACCGTGGAAAATTCATCGACGATCCTGAATCCGCCACTGGATTGGAACGCGCCGTCATTCCTCCCGGAAAGAGCTTCAGATCGACCTTAGGTCTCAAAGAAGGAGGTCCGTTGTTCGGATTCACCAAGGCCAATGAGCTCTTCGTCGGAAGATTGGCGCAGCTAGGGTTTGCGTTCTCGTTGATCGGAGAAATTATTACAGGAAAGGGAGCTTTGGCGCAATTGAACATCGAGACGGGAGTGCCGATCAATGAGATTGAGCCTCTGGTTTTGTTGAATGTCGTGTTCTTCTTCATTGCGGCTGTGAATCCTGGGACTGGTAAATTCGTGACGGATGAAGAAGATGATGATTGA 819 49.45 MAAQTMLLTSGVCVGHGVCLKRELSLRPNNTQFTRLFFSPLPSHSVSLPGRGFTTLAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPESATGLERAVIPPGKSFRSTLGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDD 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14161644 14163525 + PI0026373.1 Cmetu03g0812 350956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0812 272 FunFam Photosystem II 22 kDa protein, chloroplastic 47 134 - -
Cmetu03g0812 272 SUPERFAMILY Chlorophyll a-b binding protein 84 134 - -
Cmetu03g0812 272 FunFam Photosystem II 22 kDa protein, chloroplastic 135 241 - -
Cmetu03g0812 272 Gene3D Chlorophyll a/b binding protein domain 132 242 - -
Cmetu03g0812 272 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 69 128 - -
Cmetu03g0812 272 Pfam Chlorophyll A-B binding protein 86 216 IPR022796 -
Cmetu03g0812 272 SUPERFAMILY Chlorophyll a-b binding protein 128 250 - -
Cmetu03g0812 272 Gene3D Chlorophyll a/b binding protein domain 35 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0812 K03542 - - csv:101206477 491.886
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g264 Blo01g01295 . . . Bpe02g00643 . . Bma01g02070 Cmo04g02470 Cmo15g00693 . . . . Sed01g3127 . . Bhi04g01917 Tan11g1281 Cmetu03g0812 . Hepe02g2274 . Lcy10g1223 Cla08g00587 Cam08g1002 Cec08g0591 Cco08g0701 Clacu08g0711 . Cre08g0522 Cone4ag1409 Cone7ag1531 . . . . . Cme03g00563 . . . . . . . . . . . . . Car04g02287 Car15g00626 Cpe01g02049 . . . . . . . . . . . . . . . Lsi08g00433 . Chy03g00803 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009327 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34