Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0819 ATGCGAATTCCCAGGAGACAGGTTTCCTTTTGCCTCTCCTTATTCTCGCTCGAATTCACATACCCTTTATCCTCCCCAAGTTTTCTGGGAATTCCCAATTCCTTTATCCGCAAACCCAAAAGGATTCATACCCTAGGATTAAATCAATTGCGTCCTATTGATGCCATGGGCGAGAACCTTGGGACTGTCTTGAAGGACAAGAGAACACATTCTCTTGATGTTACCCACATTGAGGATGGCCAGGAGCCATGCATATGGTCATCATCAGAAGAATGCAAAATTGATATTGGAAAGCAGATCTTTTGCAATAGATCTTTGAATATGAAAAATATTGTTGCCGTGGGGTTTGACATGGATTACACGTTGGCGCAATACAAGCCAGAAACTTTTGAGTCCCTCGCATATGAAGGCACGATAAGAAAGTTGGTTTATGATTTGGGATATTCTGAAGAGTTGCTGAATTGGTCATTTGACTGGAAATACATGGTCAGAGGTTTGGTTCTTGATAAAAAGAGAGGCAACATATTGAAGATGGATAGGCACAAGTACGTCAAAGTAGCTTACCATGGTTTCAAAGAGTTGTCCAAGGACGATAAAGTTGAGACCTATGGAAATACTTTAGTACGGGATTCTTTTGATGAACCTGACTATGCTCTCATTGATACCCTTTTTTCACTAGCTGAAGCCTACTTGTTTGCTCAACTGGTTGACTTCAAGGATAATAATCCGGACAAAGTTCCAGAAGATATTGATTATGCTCGGATGTATAAAGATGTTAGAGCTGCAGTAGATTTGTGTCACCGTGATGGAACCTTAAAGCAAATGGTTGCAAAAGATCCCGAAAGATATATCAATGTAGATTCATCAATTTTGCCCATGCTTAAAATGCTCAGAGATTCAGGCCGTTCCACTTTCTTGGTGACAAACAGCTTATGGGACTATACAAACGTTGTGATGAACTTCCTTTGTAATTCTTCTGCACCAGATGGTGATCAGAACTGCAATTTTGATTGGCTTCAGTATTTCGATGTTGTTATCACTGGCAGTGCTAAGCCAGGTTTCTTCCATGATGACAATCGTGCTAATCTATTCGAGGTTGAAGCAAAGTCCGGAATGCTACTTAATACTGATAATGGTTCGCCAATGCCTCAGGTGGGAATGGCGTCGTTGGCTTTGTCACCTACGAAGTTAAGTAAATCTTGCAGAGTTTTTCAGGGAGGCAATGTCAGGCATCTGCACAAACTTCTTTCCATTGAATCGAGTTCACAGGTTCTTTATGTTGGAGATCACATCTATGGAGATATATTACGGAGCAAAAAGGCTCTTGGATGGAGGACTATGCTTGTTGTTCCAGAGCTTGAAAGGGAGGTCGAGCTCTTATGGGAGTTGAGGAAGACCCGCAAGCAACTTCAACAATTAAGAAACGAGCGGGATGCCATTGAAGACCAAATACATCATTTGAAGTGGTCTCTCAAATTTGAAGATATTGAGGCTGATGACAAGGACAGATTATCTACTGGACTACATCAGTTAGAGGGTGAACGAGAACGAGTGCGGTTGAGTCATCAAGACGCTCTACGGGAATGTCACCGACAGTTTCATGGGGTTTGGGGACAACTGATGAAGACTGGATATCAAAACTCTAGATTTGCTCATCAAGTAGAGAGATTTGCTTGCCTTTACAGCAGCCAAGTGACCAACTTAAGCCTATATTCCCCAGATAAATACTACAGGCCAAGTGAAGATTTTATGCCCCATGAATTTGGCATCATTCCTTTGTGA 1782 41.75 MRIPRRQVSFCLSLFSLEFTYPLSSPSFLGIPNSFIRKPKRIHTLGLNQLRPIDAMGENLGTVLKDKRTHSLDVTHIEDGQEPCIWSSSEECKIDIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYEGTIRKLVYDLGYSEELLNWSFDWKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFKELSKDDKVETYGNTLVRDSFDEPDYALIDTLFSLAEAYLFAQLVDFKDNNPDKVPEDIDYARMYKDVRAAVDLCHRDGTLKQMVAKDPERYINVDSSILPMLKMLRDSGRSTFLVTNSLWDYTNVVMNFLCNSSAPDGDQNCNFDWLQYFDVVITGSAKPGFFHDDNRANLFEVEAKSGMLLNTDNGSPMPQVGMASLALSPTKLSKSCRVFQGGNVRHLHKLLSIESSSQVLYVGDHIYGDILRSKKALGWRTMLVVPELEREVELLWELRKTRKQLQQLRNERDAIEDQIHHLKWSLKFEDIEADDKDRLSTGLHQLEGERERVRLSHQDALRECHRQFHGVWGQLMKTGYQNSRFAHQVERFACLYSSQVTNLSLYSPDKYYRPSEDFMPHEFGIIPL 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1837992 1844709 - PI0019716.1 Cmetu03g0819 350963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0819 593 Gene3D - 260 480 IPR023214 -
Cmetu03g0819 593 Gene3D - 96 146 IPR023214 -
Cmetu03g0819 593 Coils Coil 456 490 - -
Cmetu03g0819 593 PIRSF NT5C2 81 592 IPR016695 -
Cmetu03g0819 593 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 95 587 IPR008380 -
Cmetu03g0819 593 Pfam 5' nucleotidase family 100 588 IPR008380 -
Cmetu03g0819 593 FunFam Cytosolic purine 5-nucleotidase 260 479 - -
Cmetu03g0819 593 SUPERFAMILY HAD-like 98 589 IPR036412 -
Cmetu03g0819 593 Coils Coil 508 528 - -
Cmetu03g0819 593 NCBIfam HAD-IG family 5'-nucleotidase 100 470 IPR008380 -
Cmetu03g0819 593 CDD HAD_cN-II 101 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0819 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0819 Cmetu-Chr3:1837992 Cmetu11g1244 Cmetu-Chr11:3345119 1.90E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g266 Blo01g00017 . . . . . . Bma05g00981 . . . . . . . . . . . . . . . . Cla06g00386 . Cec06g0417 . . . . . Cone15ag0684 . . . . . . . . . . Bpe05g00790 . . . Sed11g1035 . . . . . . Cpe12g00353 . Bhi12g02006 Tan06g2823 Cmetu03g0819 Lac11g1075 Hepe03g0003 . Lcy12g0924 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003481 3 3 3 2 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 3 1 48