Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0859 ATGGAGAGAAGAAAATGGCCATGGAAGAGAAAGTCATCTGATAAGAGTCCTGGAGAAACTGAAAGTTCCGGTTCAATGTCATCGTATTCAGAGAGATTTTCCGACGAGCAGGATGCAGCCAAGTCATCTCCCAGTCATGAGACTCAGTCTCCAGAAGTAACGTCAAAAGCGATATGTAAGGAAGAAGACATTGATGATGATTCGCCAAATCAAGAAGAGATCAATGATAGTGTGAAAAGTCTATCCGAGAGGTTATCAGCTGCTCTTGTAAATGTGAAGGCCAAAGAAGACTTGGTAAAGCAGCATGCTAAAGTTGCGGAAGAAGCTATCGCAGGATGGGAAAAGGCGGAAAACGAAGTTACACATCTAAAACAGCAGCTTGGGACTACAGTTCAGCAGAAGTCTGCCTTGGAAGATCGAGTGAGCCACCTTGATGGGGCCCTAAAAGAATGTGTTAGGCAGCTTAGGCAGGCAAGAGAGGAGCAGGAGCAGAAGATTCATGACGCGGTGGAGGAAAAAACCCGAGATTGGGAGTCCACCAAGGTGGATCTTGAGAGGCAGCTCCTTGCGCTCCAGAGCAAAGCAGATGCTGCTAAATGCGAATCTCCTAAAGTTGATCTTAGCCTTGGCAAGATGCTTGAGTTGTTGAAGAGAGAGAATGCAGCCCTCAGGCATGAGCTTCATGCTCAATATAGGGAATTAGAAACTAGGACTATTGAGAGGGATTTGAGTACACAAACAGCTGAAACAGCCAGTAAGCAGCATCTTGAGAGCATAAAGAAAATGGCCAAGCTCGAGGCTGAGTGTCGCAGGTTAAAGTTTATGTCGTGCAAACCATCATTGGTAGATCACAAATCGATAGCTGCTTCGACGATCTCTATCGAGTCACTTACCGACACTCAATCAGATAATGGGGAGCAGCTTAGTGCAGTGGATATTGAAATAAGAACCGAACGAAACAAAGGCGAGCCTAGTTGCTCACATCCACGGGCATCAACCTTACTTGCAGAACTCAATCAGCTTGGGAATGAAAAGGCCGTTAGCAGTAATCTTCCGTCTTCTCTTGAACTTGATCTCATGGATGATTTTCTTGAGATGGAAAGGCTTGCTTCGTTACCTGAAACTGATACCGGAAAGAGTCGTCAAGAATCAGAAGCTTTCCCTCGCTCTACTGCAGAAGAAAATGTGCTAAGAATGGAGCTTGAGGCCTTGCGGCATGAGAGATCCCTAATGGAGGAGAAGCTGGGTGAGATGGAGGAAGCAAAGATTGAATTGGAAGAGAAGCTGAAACAAATGGAAGTGGAGAAGGATGAATTGGAAGAGAGGCTGGAGATGATGGAAATAGAGAGAGATGAAGCGAATCAAATGTTGGCGAAAATGGAGACCGAACAATATGAATTGGGGCAAAAGTTGGTGAAGATGGAAGAAGAGAAAGTTGAAATGGGAGAGAAATTAATGAAGTTGGATACACAGAAAGATGAACTGGAGACTGCTCTATCCCGAAGTCAGAACTCTGCTGAGATTTCACAATTTCAACTCAAGGAAACACAAATGAAACTGGAAAGGTTACAGAATGAACTCACCATTGCAAATGAATCAAAGTTAAGAATTGAGTCTCAACTTATCAGCATGGAAGCAGAATCTCTGACCATGTCTACAAAAGTTGGGATGTTGGAATCTGATATTCAAAAAGAGAGGGAATCAGCAATGGCATTGACAGTCAAGTGTCAGGTACTAGAAGAGGAGCTTTCAAGATTGAAACAGGACGAAAAACTATCACAAAGTGAAATCTCCAAAAATGAGTTGAAGATAAAGCAGGAGGATCTAGCAGTAGCTGCTGGGAAACTTGCTGAATGTCAAAAGACAATTGCATCTCTTGGGAATCAGCTTAAATCTCTAGCAGCACTTGAAGATTTTCTTATCGATACGACAAATCTACCGGAGTTCACAGCCAGTGAATCTCTAAACATCACTACAGATGGCGAGGAGCAATGCAAGCATTCGAACGGAACACTTTCACCCAAAAGAGATTCAGACTTTACTAAAGTAGTTGATGACAATTCTGAACCATTAATGAGTAAGAATGGAGACGACTCGCCCCCCTCTTCATCTTCTTCAACTTCATCATCTATGATAACAAGTCATGTTGTCAATTCTGAAAAAAACCGAAATGGTTTTGCGAAGTTTTTCTCTCGAACAAAGAGTGGGATAAAACTAGAAATATAG 2226 43.04 MERRKWPWKRKSSDKSPGETESSGSMSSYSERFSDEQDAAKSSPSHETQSPEVTSKAICKEEDIDDDSPNQEEINDSVKSLSERLSAALVNVKAKEDLVKQHAKVAEEAIAGWEKAENEVTHLKQQLGTTVQQKSALEDRVSHLDGALKECVRQLRQAREEQEQKIHDAVEEKTRDWESTKVDLERQLLALQSKADAAKCESPKVDLSLGKMLELLKRENAALRHELHAQYRELETRTIERDLSTQTAETASKQHLESIKKMAKLEAECRRLKFMSCKPSLVDHKSIAASTISIESLTDTQSDNGEQLSAVDIEIRTERNKGEPSCSHPRASTLLAELNQLGNEKAVSSNLPSSLELDLMDDFLEMERLASLPETDTGKSRQESEAFPRSTAEENVLRMELEALRHERSLMEEKLGEMEEAKIELEEKLKQMEVEKDELEERLEMMEIERDEANQMLAKMETEQYELGQKLVKMEEEKVEMGEKLMKLDTQKDELETALSRSQNSAEISQFQLKETQMKLERLQNELTIANESKLRIESQLISMEAESLTMSTKVGMLESDIQKERESAMALTVKCQVLEEELSRLKQDEKLSQSEISKNELKIKQEDLAVAAGKLAECQKTIASLGNQLKSLAALEDFLIDTTNLPEFTASESLNITTDGEEQCKHSNGTLSPKRDSDFTKVVDDNSEPLMSKNGDDSPPSSSSSTSSSMITSHVVNSEKNRNGFAKFFSRTKSGIKLEI 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14127959 14133216 - PI0012673.1 Cmetu03g0859 351003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0859 741 MobiDBLite consensus disorder prediction 661 717 - -
Cmetu03g0859 741 MobiDBLite consensus disorder prediction 1 79 - -
Cmetu03g0859 741 MobiDBLite consensus disorder prediction 1 17 - -
Cmetu03g0859 741 MobiDBLite consensus disorder prediction 371 392 - -
Cmetu03g0859 741 Pfam Filament-like plant protein, long coiled-coil 476 635 IPR008587 -
Cmetu03g0859 741 Pfam Filament-like plant protein, long coiled-coil 323 384 IPR008587 -
Cmetu03g0859 741 Pfam Filament-like plant protein, long coiled-coil 209 275 IPR008587 -
Cmetu03g0859 741 Pfam Filament-like plant protein, long coiled-coil 95 203 IPR008587 -
Cmetu03g0859 741 SUPERFAMILY Tropomyosin 402 615 - -
Cmetu03g0859 741 Coils Coil 141 201 - -
Cmetu03g0859 741 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 476 - -
Cmetu03g0859 741 Coils Coil 394 540 - -
Cmetu03g0859 741 MobiDBLite consensus disorder prediction 669 684 - -
Cmetu03g0859 741 MobiDBLite consensus disorder prediction 371 388 - -
Cmetu03g0859 741 Coils Coil 213 233 - -
Cmetu03g0859 741 MobiDBLite consensus disorder prediction 693 717 - -
Cmetu03g0859 741 Coils Coil 562 596 - -
Cmetu03g0859 741 MobiDBLite consensus disorder prediction 18 33 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0859 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0859 Cmetu-Chr3:14127959 Cmetu04g0845 Cmetu-Chr4:29535428 8.60E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g263 . . . . . . . . . Cmo15g00692 . . . . Sed01g3126 . . Bhi04g01916 Tan11g1279 Cmetu03g0859 . Hepe02g2273 . Lcy10g1224 . . . . . . . . . . . . . . Cme03g00560 . . . Bda01g01427 Bpe02g01641 . Bma01g00819 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g00801 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003586 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 47