Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0875 ATGGAGAGGTTGTCGGCGGTGGCTTCAGCTGCTTCACTGCCTGAGAGGACGACGATTTCGGCGGCGCCATGTGGGTTTGTGAGTTGGTATGAGGTCTTCGTATCGAGTGACAGAGGGAGAAGAGAGGTTCATTATTACTTGAAGCGCGGCGATGGGGCCTCAGATCTGGCCGTCGTGGGGAAAGAGAAGAGCTTGAGACATATGTCTTATCATTATGCTTTGCCGAATCGGTTCCTTAATTCTCTGGGGCTGTTTACCTCGCTCACGAAGCTCAAGTCTCGCAGGGAGGTCGTTGAATGGCTAAGCTCTGTTGTTTCTGATTCCCAACGTAAAACATCACAACCATCTGATCGTATGATGGACATAGAAGGTGAAGATGCTTGCCCGTCCAACAGTGGATCTAAGAAGGATGTTCAACATATAAAATTGGGTCAATATACCAGAGATTTTTCATGGCTTGGATGCCCTTGGACTTGTAAACGAAAGCGGCGACACTATACATCATTCAGCCGCAATGGTATTAAGATCTCGGTTCATGACTTTGTATATGTCTTGGCCGAGGAAGGCAAGCGTCTTGTTGCATACTTGGAGGATATGTATGAGGACTCTAGAAGCAACAGGATGGTTGTGGTACGATGGTTTCACAAAATTGATGAGGTTGATATTGTTTTGCCCCGCAATTTTAATGACAGAGAGATTTTCTTTTCTCTTTGTCTTCAAGATCTCAGTATTGAATGCATAGATGGCTTGGCGACTGTTCTCAGTCCCCACCATTTTCAGAAGTTCCAGAACGAGGCAAAACATACTAGATTGGAGCCATATGTATGTGAGAAGCAATTTGATAATGATGATATCAAAACCTTTGATATTACACAGGTCAAAGGCTATTGGAAGCAAGAAATACTCAGATACATGTATGCTCTTTCTTCAAAAGCACATGGCCACTCTCAGCAGTCAGAAGATGACACAAGTGCTGAGATGAGACCTAGAAAGAGACATCGACGCTCAAGAAATGATGACTTGCAAAATGCTGAGAAGAGACAGCCTGGAAACACGTCTTCTTCTCTTGAAGTGCGCAGTTCAGGCAACTACTCTGTTGATTTAAAGAACAGTGATGTTGTTTTCAGTCCCAAAGGAGGTTGTGCTTCTAAAACTTTTATAGGCAAGGAGATGAACAATTCTTCTTCAAGTCAGTTTGCTGTTGCATCAGAGGTTGAAGTTCTCTCACAAGATAGTGGTATTAGAGGGTGTTGGTTCAGAGCTTCCATAATAAAAAAGCGTGGAGACATGGTCAAGGTGCAATATCACAATCTTCAGGATGCTGACGATGAATCTACCAAGCTTGTGGAATGGCTTTCAGCATCACGAGTTGCAGCTGCTGATCAATTGGGTCTACGCATCAATGGAAGATTGGTTATTCGTCCACATCCTAGTAAGGAGGGTAGCAAAGCTCCCTTAATTTACAACGTTGGGGCAGTTGTTGATGTATGGCGGCATGACGGTTGGTGGGAAGGAATTGTAGTTCAGAAGGAATCCGATGACAGTTTCCGCATTTACTTGCCAGGTGAAAAGCAAGAATTAGTTCTTGGCTCGGACGATTTGAGGCATTCTCAAGAATGGTTAGGAAACCGGTGGATGCATATGCAAGAAAGGCCAGATATTGCAATGTCCATTATGTCTTGCATTTCAAATGATGGCCTTCCCGATAAGGTGTCAACCATGTCGAGCCTAGTTGCTCTTAGTGACCGGAAACAACCAGGGGAAGATCGAAGTCAACCAAGTGAACCTCGATCTAACTCTGTCCTAGACAAGGCTAAAGAATCATGCACGGTTCCAGATCTTTCCAAAGATGGTTTGCTCACCAAATTGCGGTGGACAGGTTCGAAGAAAAGAAGCCAACCCAGTAGCAGCAGTTCGGGTAAATCCTTTCCTTCCCCAATAGCTTCTTCCAGTCCTTGTGAAAGTAGTTTTAGGATTCCAAGCTCAATGAAAATGGATCATGATAACTGCAAGTACATGGGGGATTCTTTGTTCAATTCATCAGTTGTGCCACCTCTCTCAAGCTTGGTAATGTCTAGATGA 2082 44.28 MERLSAVASAASLPERTTISAAPCGFVSWYEVFVSSDRGRREVHYYLKRGDGASDLAVVGKEKSLRHMSYHYALPNRFLNSLGLFTSLTKLKSRREVVEWLSSVVSDSQRKTSQPSDRMMDIEGEDACPSNSGSKKDVQHIKLGQYTRDFSWLGCPWTCKRKRRHYTSFSRNGIKISVHDFVYVLAEEGKRLVAYLEDMYEDSRSNRMVVVRWFHKIDEVDIVLPRNFNDREIFFSLCLQDLSIECIDGLATVLSPHHFQKFQNEAKHTRLEPYVCEKQFDNDDIKTFDITQVKGYWKQEILRYMYALSSKAHGHSQQSEDDTSAEMRPRKRHRRSRNDDLQNAEKRQPGNTSSSLEVRSSGNYSVDLKNSDVVFSPKGGCASKTFIGKEMNNSSSSQFAVASEVEVLSQDSGIRGCWFRASIIKKRGDMVKVQYHNLQDADDESTKLVEWLSASRVAAADQLGLRINGRLVIRPHPSKEGSKAPLIYNVGAVVDVWRHDGWWEGIVVQKESDDSFRIYLPGEKQELVLGSDDLRHSQEWLGNRWMHMQERPDIAMSIMSCISNDGLPDKVSTMSSLVALSDRKQPGEDRSQPSEPRSNSVLDKAKESCTVPDLSKDGLLTKLRWTGSKKRSQPSSSSSGKSFPSPIASSSPCESSFRIPSSMKMDHDNCKYMGDSLFNSSVVPPLSSLVMSR 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16795051 16799034 - PI0022561.1 Cmetu03g0875 351019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0875 693 CDD Tudor_Agenet_AtDUF_rpt1_3 399 457 - -
Cmetu03g0875 693 Gene3D - 157 378 IPR043151 -
Cmetu03g0875 693 Pfam Agenet domain 403 477 IPR008395 -
Cmetu03g0875 693 MobiDBLite consensus disorder prediction 315 329 - -
Cmetu03g0875 693 MobiDBLite consensus disorder prediction 626 658 - -
Cmetu03g0875 693 MobiDBLite consensus disorder prediction 581 608 - -
Cmetu03g0875 693 ProSiteProfiles BAH domain profile. 174 291 IPR001025 GO:0003682
Cmetu03g0875 693 Pfam BAH domain 175 283 IPR001025 GO:0003682
Cmetu03g0875 693 MobiDBLite consensus disorder prediction 622 660 - -
Cmetu03g0875 693 SMART agenet_At_2 397 463 IPR014002 -
Cmetu03g0875 693 SMART agenet_At_2 486 542 IPR014002 -
Cmetu03g0875 693 MobiDBLite consensus disorder prediction 345 361 - -
Cmetu03g0875 693 MobiDBLite consensus disorder prediction 313 361 - -
Cmetu03g0875 693 SMART BAH_4 174 291 IPR001025 GO:0003682
Cmetu03g0875 693 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 386 657 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0875 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2113 Cmetu-Chr1:13086872 Cmetu03g0875 Cmetu-Chr3:16795051 1.70E-61 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g239 . . . . Bpe02g00636 . . Bma01g02077 Cmo04g02490 Cmo15g00672 . . . . Sed11g1620 . . Bhi04g01885 Tan11g1888 Cmetu03g0875 . Hepe02g2232 . . Cla08g00612 Cam08g1026 Cec08g0615 Cco08g0727 Clacu08g0736 . Cre08g0544 . . . Cone20ag0434 . . . Cme03g00522 . . . . . . . . . . . . . . . Cpe01g02064 . . . . . . . . . . . . . . . Lsi08g00452 . Chy03g00768 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004134 1 5 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44