Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0877 ATGGAAGAGCAAGAGGATAATAAGCAGCAGCAGCAGCAGCAGCTTCCCCAAAGGATATCTCTTGCTTATGTTGAACAGGTGAACACAGATTTGATCATGGCCTTGGCAATGCAGCAGCAGGAGCACGAGATGGCCTATACGACGCTCGAGACCATTGAAAGTGATAGCGAAGAAGACGAAAATTCAGATTCCAACAGCAATAATGGTCTTGATACAAATACCCCCTCACAAAGGCAAGAACTTCTATCCCGGTGGGCTTTTTTGGAAGACGATGAAGAGACTACGGATGGAAATGAAGATATGGAAGAAGATGAAGATGGGGATTTTGAGGGTTTAGATCTGGATGCGCTTACTTATGAGGAGTTGATTGCATTAGGGGAGTTCATTGGGGAAGAAAAGAGGGGCCTACCGATAAACGAAATACCTTCATGCTTGCACTCGAGTAAGTTCCGAACCATTGAAAACAGAAGTGGAATAGATCGGTGTGTGATTTGCCAAGTTGAATATGATGATGGTGAAGAATTGGCTGCTCTTCCTTGTGAGCATCCTTATCATTCAGAATGTATAGGCAAATGGCTTCAAATCAAAAGGGTTTGTCCAATATGTGGCACAGAAGTTTCATCCCCCAATGGTTCTAAAAATGAATAA 648 43.21 MEEQEDNKQQQQQQLPQRISLAYVEQVNTDLIMALAMQQQEHEMAYTTLETIESDSEEDENSDSNSNNGLDTNTPSQRQELLSRWAFLEDDEETTDGNEDMEEDEDGDFEGLDLDALTYEELIALGEFIGEEKRGLPINEIPSCLHSSKFRTIENRSGIDRCVICQVEYDDGEELAALPCEHPYHSECIGKWLQIKRVCPICGTEVSSPNGSKNE 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12253596 12254243 + PI0019024.1 Cmetu03g0877 351021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0877 215 ProSiteProfiles Zinc finger RING-type profile. 162 202 IPR001841 -
Cmetu03g0877 215 MobiDBLite consensus disorder prediction 45 108 - -
Cmetu03g0877 215 SMART ring_2 162 202 IPR001841 -
Cmetu03g0877 215 MobiDBLite consensus disorder prediction 65 81 - -
Cmetu03g0877 215 FunFam E3 ubiquitin ligase BIG BROTHER-related 128 209 - -
Cmetu03g0877 215 MobiDBLite consensus disorder prediction 92 108 - -
Cmetu03g0877 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 211 IPR013083 -
Cmetu03g0877 215 SUPERFAMILY RING/U-box 161 209 - -
Cmetu03g0877 215 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 91 210 IPR043312 -
Cmetu03g0877 215 Pfam Ring finger domain 161 202 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0877 K19045 - - csv:101217935 323.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0877 Cmetu-Chr3:12253596 Cmetu10g0737 Cmetu-Chr10:16845970 2.50E-19 dispersed
Cmetu03g0877 Cmetu-Chr3:12253596 Cmetu03g2117 Cmetu-Chr3:3806861 3.10E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g241 . . . . . . . . Cmo04g02489 . . . . . Sed01g3107 . . Bhi04g01887 Tan11g1255 Cmetu03g0877 . Hepe02g2233 . Lcy10g1240 Cla08g00611 Cam08g1025 Cec08g0614 Cco08g0726 Clacu08g0735 . Cre08g0543 . . . . . . . . . Blo18g00179 . Bda01g01452 Bpe02g01648 . . . . . . . . Car04g02303 . . . . . . . . . . . . . . . . . Lsi08g00451 . Chy03g00769 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007823 3 3 1 0 1 1 2 1 1 1 1 1 3 1 1 2 1 1 0 1 1 1 1 1 0 1 1 2 1 1 36