Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0931 ATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTCCCCTCAATGATGGGGGATGACGACGGTGAATATGAAGATGGTGGCGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCTGTGCTCTTACTTCTTGGAGGGCGTGATGTGCCAGCAGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACCTTATGCAATGCATGTGGTTTGATGTGGGCAAACAAGGGCACATTGAGAGATCTCAGCAAGGGAGGGAGAAATGTGTCTCTGGATCATATGGAACCTGAAACTCCAATGGATGTCAAGCCCATAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCTGGATGAAGAAGACATGAATGAAACCACGGGAGACCTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCATCAAATGATGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1059 47.69 MAAANPQPLQARPFQEHVQVPSMMGDDDGEYEDGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPAGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPIIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDLDEEDMNETTGDLTNSLPMRIVNHSSNDDEQEPLVELANPSDTDIDIPTNFD 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2895263 2902743 - PI0007293.2 Cmetu03g0931 351075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0931 352 Pfam CCT motif 133 174 IPR010402 GO:0005515
Cmetu03g0931 352 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355|GO:0043565
Cmetu03g0931 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 248 - -
Cmetu03g0931 352 SMART GATA_3 198 251 IPR000679 GO:0006355|GO:0043565
Cmetu03g0931 352 ProSiteProfiles GATA-type zinc finger domain profile. 198 246 IPR000679 GO:0006355|GO:0043565
Cmetu03g0931 352 Pfam tify domain 68 99 IPR010399 -
Cmetu03g0931 352 ProSiteProfiles CCT domain profile. 133 175 IPR010402 GO:0005515
Cmetu03g0931 352 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355|GO:0043565
Cmetu03g0931 352 CDD ZnF_GATA 203 247 IPR000679 GO:0006355|GO:0043565
Cmetu03g0931 352 SMART tify_2 65 100 IPR010399 -
Cmetu03g0931 352 MobiDBLite consensus disorder prediction 310 324 - -
Cmetu03g0931 352 MobiDBLite consensus disorder prediction 276 352 - -
Cmetu03g0931 352 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Cmetu03g0931 352 PANTHER GATA TRANSCRIPTION FACTOR 28 3 346 IPR045280 GO:0006355
Cmetu03g0931 352 MobiDBLite consensus disorder prediction 21 43 - -
Cmetu03g0931 352 Gene3D - 196 254 IPR013088 GO:0006355|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0931 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2498 Cmetu-Chr1:27971842 Cmetu03g0931 Cmetu-Chr3:2895263 1.00E-55 dispersed
Cmetu03g0931 Cmetu-Chr3:2895263 Cmetu12g2014 Cmetu-Chr12:556771 1.20E-07 dispersed
Cmetu03g0931 Cmetu-Chr3:2895263 Cmetu03g0605 Cmetu-Chr3:2904005 9.40E-48 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g532 . Blo12g00738 . . Bpe02g00146 Bpe04g00413 Bma04g00427 Bma01g02579 Cmo05g00563 Cmo12g00161 . . . . Sed03g1396 . Cpe07g00176 Bhi04g01396 Tan02g2466 Cmetu03g0931 . . . . . . . . . . . . . . . . . . . . . Bda11g00807 . . . . . . . . Cma12g00207 . . . . . . . . . . . . . . . . . . . Lsi08g01017 Csa02g02199 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g2498 . 1 230 Tify Gene Family AT3G21175 56.5 7.3e-59 224.2
Cmetu03g0605 . 45 293 Tify Gene Family AT4G24470 54.1 1.9e-71 266.5
Cmetu01g0685 . 89 298 Tify Gene Family AT4G24470 53.7 1.3e-48 190.7
Cmetu01g2498 . 1 290 Tify Gene Family AT1G51600 59.4 2.3e-87 319.3
Cmetu01g0685 . 86 300 Tify Gene Family AT1G51600 55.2 1.9e-52 203.4
Cmetu03g0931 . 71 246 Tify Gene Family AT1G51600 59.0 6.0e-51 198.4
Cmetu03g0605 . 38 247 Tify Gene Family AT1G51600 52.4 4.0e-47 185.7
Cmetu03g0605 . 45 293 Tify Gene Family AT4G24470 54.1 1.9e-71 266.5
Cmetu01g0685 . 89 298 Tify Gene Family AT4G24470 53.7 1.3e-48 190.7
Cmetu01g2498 . 1 290 Tify Gene Family AT1G51600 59.4 2.3e-87 319.3
Cmetu01g0685 . 86 300 Tify Gene Family AT1G51600 55.2 1.9e-52 203.4
Cmetu03g0931 . 71 246 Tify Gene Family AT1G51600 59.0 6.0e-51 198.4
Cmetu03g0605 . 38 247 Tify Gene Family AT1G51600 52.4 4.0e-47 185.7
Cmetu01g2498 . 1 230 Tify Gene Family AT3G21175 56.5 7.3e-59 224.2
Cmetu05g1474 . 1 180 Tify Gene Family AT4G14713 52.1 1.9e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7566 PF06203 CCT 1.30E-13 CL0281 Cmetu TF