Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0957 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAGATGGACATGGGTATGGGTTATTACACCGATGACGATGACCCTGATGCTGAGGATTTCGTCGATGATGATACCGATGATTACTTCGAGGCCAGCCGACGCGAGCAAAATTATACAATACTAAATGAGTCGGACATAAGACAACGCCAAGAGGACGACATTACTAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTATTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGGATCTGTTTTGAATCCTATCCAAATAGTGGGATCAAGTCAGCTGCTTGTGGTCACCCTTTCTGTGTCTTCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCTTCTTGTGGTGCTGTGGTTGATCAAGACATGATTAATTCATTGGCTTCCAGTGAAGACAGGAAAAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACCAAATGGTGCCCAGCGCCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAATTATGATGTTTCTTGCTTCTGCACATATGGCTTCTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCCGAGAATATGAACTGGATATTAGCTAATTCGAAGCCTTGCCCAAAGTGCAAGCGGCCAATTGAGAAAAACCAAGGTTGCATGCACATGACTTGCACACCTCCTTGCAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCATGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAGAGAAGAGAGATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGCTACAGATAATTGAATGTAGACGTGTTTTAAAATGGACTTATGCATATGGTTATTACTTGCCGGAACTGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTACAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTCCATCAGTGTGCGGAAAAGGAGCTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTATTTTGAGAACCTTGTTAGAGCATTAGAAAATGGGCTTTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACAAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAGTGGACGTGGTAAGGGAGTGAGTCGAACTGCTAGCTCGACCAGAAGTGGCGACAATGCCACTCACTGGTCGTGTGAACACTGTACCTTTGTGAACACTAGATCTGCTACTACATGTGAGATGTGCCAGCAACGCCATTGA 1776 44.09 MDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYTDDDDPDAEDFVDDDTDDYFEASRREQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADEARVRKQVGLLEAPIVHVLNARERTCGICFESYPNSGIKSAACGHPFCVFCWEGYISTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASSEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPELEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTASSTRSGDNATHWSCEHCTFVNTRSATTCEMCQQRH 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19249278 19257371 + PI0021215.1 Cmetu03g0957 351101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0957 591 ProSiteProfiles Zinc finger RanBP2 type profile. 560 591 IPR001876 -
Cmetu03g0957 591 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 70 437 IPR031127 GO:0004842|GO:0016567
Cmetu03g0957 591 SMART ibrneu5 209 271 IPR002867 GO:0008270
Cmetu03g0957 591 SMART ibrneu5 275 345 IPR002867 GO:0008270
Cmetu03g0957 591 CDD BRcat_RBR_ANKIB1 216 280 - -
Cmetu03g0957 591 Coils Coil 357 377 - -
Cmetu03g0957 591 FunFam RBR-type E3 ubiquitin transferase 272 522 - -
Cmetu03g0957 591 MobiDBLite consensus disorder prediction 523 543 - -
Cmetu03g0957 591 Pfam IBR domain, a half RING-finger domain 288 336 IPR002867 GO:0008270
Cmetu03g0957 591 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 GO:0008270
Cmetu03g0957 591 Gene3D - 267 522 - -
Cmetu03g0957 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Cmetu03g0957 591 SUPERFAMILY Ran binding protein zinc finger-like 564 589 IPR036443 -
Cmetu03g0957 591 Gene3D - 561 591 - -
Cmetu03g0957 591 ProSitePatterns Zinc finger RanBP2-type signature. 568 587 IPR001876 -
Cmetu03g0957 591 ProSiteProfiles Zinc finger RING-type profile. 140 186 IPR001841 -
Cmetu03g0957 591 SMART zf_4 566 590 IPR001876 -
Cmetu03g0957 591 SUPERFAMILY RING/U-box 290 338 - -
Cmetu03g0957 591 SUPERFAMILY RING/U-box 210 278 - -
Cmetu03g0957 591 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Cmetu03g0957 591 MobiDBLite consensus disorder prediction 551 565 - -
Cmetu03g0957 591 FunFam RBR-type E3 ubiquitin transferase 134 223 - -
Cmetu03g0957 591 SUPERFAMILY RING/U-box 137 218 - -
Cmetu03g0957 591 Pfam Ariadne domain 358 519 IPR045840 -
Cmetu03g0957 591 CDD Rcat_RBR_ARI7-like 294 348 - -
Cmetu03g0957 591 MobiDBLite consensus disorder prediction 523 565 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0957 K11968 - - csv:101223037 1148.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0957 Cmetu-Chr3:19249278 Cmetu05g0445 Cmetu-Chr5:13383394 2.10E-257 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu11g0823 . 164 589 ARIADNE family AT4G34370 72.4 8.4e-184 640.2
Cmetu11g0823 . 58 542 ARIADNE family AT2G16090 77.4 1.3e-225 779.2
Cmetu11g0823 . 28 543 ARIADNE family AT3G27710 61.7 4.3e-185 644.8
Cmetu11g0823 . 44 522 ARIADNE family AT3G27720 54.5 7.5e-144 507.7
Cmetu05g0445 . 1 542 ARIADNE family AT1G05890 63.4 3.2e-218 755.0
Cmetu03g0957 . 61 529 ARIADNE family AT1G05890 73.3 1.5e-215 746.1
Cmetu05g0445 . 20 597 ARIADNE family AT1G65430 73.4 9.5e-260 892.9
Cmetu03g0957 . 16 588 ARIADNE family AT1G65430 67.5 8.4e-240 826.6
Cmetu05g0445 . 9 460 ARIADNE family AT2G31780 53.8 2.0e-148 522.7
Cmetu03g0957 . 57 454 ARIADNE family AT2G31780 57.8 1.3e-142 503.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72