Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g0999 ATGGGAGTTCCCGCGTTTCGTCTTGGGTTTTCTGTTCTTTTAGTTTTTGCTTTTGTGCTCTGTGATTTGGGTGTTTGTAATGGTGGAATTACGAGTGGGTTTGTTCGGGATGATAACGCTTCGTCGGATATGCCGCTTGATAGCGATGTTTTTAGGCCTCCTCCTGGTATAAATGCCCCCCAACAGGTTCATATAACACAGGGGGATTCTGAGGGGAAGAGTGTGATAATCTCTTGGGTTACACCAGATAAACCAGGTTCAAACAGAGTAGTTTATTGGGCTGAAAACAGTGACGTTAGAAATCATGCTGAAGGCTATTTTATTTCCTACAAGTATTTCAACTATACATCGGGTTACATTCACCACTGCACCATTAAAAACTTAGAGTATGATACTAAATACTTCTACGTGATTGGATTTGGAAGTCTATCAAGAAGGTTTTGGTTTACAACCCCTCCTAAAGTTGGCCCTGATGTGCCTTATACTTTTGGTCTTATAGGAGATCTTGGTCAAACACATGATTCTAATAGAACACTTACACACTATGAATTGAACCCAACAAAAGGACAGACCGTGTTGTTCCTTGGGGATTTATCTTATGCAGACCGTTATGCATTCCATGATAACACTAGATGGGACACATGGGGGAGGTTTGTGGAAAGAAGTGCTGCTTATCAACCTTGGATTTGGACTGCAGGGAATCATGAACTTGATTATGCTCCTGAAATTGGTGAAAGCGAACCATTTAAGCCTTATTTTCATCGTTACCATGTTCCACACAATGCATCACCTGGCTCCTCTCCCCTTTGGTACTCCATTAAAAGAGCTTCAGCTTATATAATCGTCTTGTCCTCTTACTCATCATTTGTGAAAAGCAGCCCTCAATATAAATGGCTAGAAAATGAGCTGCGGAAGGTAAACAGGGACGAGACACCATGGCTCATAGTTCTTATGCATACTCCAATGTACAGCAGTTATATCCACCATTACATGGAAGGAGAAAGCATGAGAGTGGCCTTTGAGCCGTGGTTCGTCAAATATAAAGTTGATGTAGTCTTCGCCGGGCATGTTCATGCCTACGAACGATCTGAACGAATATCAAACATTGCATACAATGTTGTAAATGGGATATGTTCTCCAGTTCATAATATAGATGCTCCAGTTTATATAACCATTGGAGATGGTGGAAACTCTGAAGGATTGGTAACTGAAATGACTGAACCACAGCCAAAATACTCGGCTTATCGTGAAGCCAGCTTTGGACATGGCATATTAGACATAAAGAACAGAACTCATGCCTACTTTGCTTGGCATAGGAACCAAGACGAATATGCTGTAGAAGCTGATTCTTTGTGGCTGCATAATCGACAATGGATATCAACTATATTGCCACAATCTTCTGTAATGACTCGCCTTTCATCAGCCGCTGCCTGA 1434 41.63 MGVPAFRLGFSVLLVFAFVLCDLGVCNGGITSGFVRDDNASSDMPLDSDVFRPPPGINAPQQVHITQGDSEGKSVIISWVTPDKPGSNRVVYWAENSDVRNHAEGYFISYKYFNYTSGYIHHCTIKNLEYDTKYFYVIGFGSLSRRFWFTTPPKVGPDVPYTFGLIGDLGQTHDSNRTLTHYELNPTKGQTVLFLGDLSYADRYAFHDNTRWDTWGRFVERSAAYQPWIWTAGNHELDYAPEIGESEPFKPYFHRYHVPHNASPGSSPLWYSIKRASAYIIVLSSYSSFVKSSPQYKWLENELRKVNRDETPWLIVLMHTPMYSSYIHHYMEGESMRVAFEPWFVKYKVDVVFAGHVHAYERSERISNIAYNVVNGICSPVHNIDAPVYITIGDGGNSEGLVTEMTEPQPKYSAYREASFGHGILDIKNRTHAYFAWHRNQDEYAVEADSLWLHNRQWISTILPQSSVMTRLSSAAA 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2090504 2094504 - PI0016140.1 Cmetu03g0999 351143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g0999 477 SUPERFAMILY Purple acid phosphatase, N-terminal domain 42 153 IPR008963 GO:0003993|GO:0046872
Cmetu03g0999 477 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 156 463 - -
Cmetu03g0999 477 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 59 155 - -
Cmetu03g0999 477 Pfam Iron/zinc purple acid phosphatase-like protein C 386 443 IPR025733 -
Cmetu03g0999 477 CDD FN3 58 151 IPR003961 GO:0005515
Cmetu03g0999 477 Gene3D - 59 155 - -
Cmetu03g0999 477 PANTHER ACID PHOSPHATASE RELATED 18 454 IPR039331 GO:0003993
Cmetu03g0999 477 SUPERFAMILY Metallo-dependent phosphatases 157 460 IPR029052 -
Cmetu03g0999 477 Pfam Calcineurin-like phosphoesterase 162 360 IPR004843 GO:0016787
Cmetu03g0999 477 CDD MPP_PAPs 157 455 IPR041792 -
Cmetu03g0999 477 Gene3D - 156 462 IPR029052 -
Cmetu03g0999 477 Pfam Purple acid Phosphatase, N-terminal domain 60 151 IPR015914 GO:0003993|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g0999 K22390 - - csv:101210805 953.355
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0999 Cmetu-Chr3:2090504 Cmetu08g1007 Cmetu-Chr8:17557028 6.00E-74 dispersed
Cmetu02g2098 Cmetu-Chr2:19474624 Cmetu03g0999 Cmetu-Chr3:2090504 9.70E-112 transposed
Cmetu01g2623 Cmetu-Chr1:5877395 Cmetu03g0999 Cmetu-Chr3:2090504 3.30E-200 wgd
Cmetu03g0999 Cmetu-Chr3:2090504 Cmetu04g0882 Cmetu-Chr4:3943950 2.00E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g3 . Blo15g00679 Bda06g00991 . . . . Bma12g00550 . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 Sed03g1723 . . Bhi05g01788 Tan02g2021 Cmetu03g0999 . . . . . . . . . . . Cone12ag1169 Cone8ag1217 . . Lsi10g00400 . Chy11g00351 . . Blo13g00542 . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97