Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1011 ATGCAGAACGCCGCCGTCGTCTTCTTGTCGGTGCTTCTCTCCGCCGCTTTCCATCCAGCTCTCAGCCTCGTCGACGGGTATTTGCCAAATGGGGATTTCGAGAGAGGTCCGAAGGCGTCGGACATGAACGGCACGGTGGTAAAAGGCCAATACGCAATACCGGAATGGGAAATTTCAGGCTTCGTTGAGTACATAAAGTCCGGGCAGAAACAAGGCGATATGTTGCTGGTGGTGCCGGAGGGGGCGTTCGCCGTCCGGCTAGGAAACGAAGCATCGATCAAACAAAAGATCAAAGTAGTCAAAGGACTTTACTATTCAATCACTTTCAGCGCCGCCCGAACCTGCGCTCAAGAGGAGCGGCTCAACATCTCCGTCGCGCCGGACTGGGGGGTTCTGCCGATGCAAACCCTTTACAACAGCAATGGCTGGGACTTATACGCTTGGGCCTTCCAAGCCAACTCCGACGAGGTCGTTATTCTCATCCATAACCCCGGCGAAGAGGAAGATCCTGCTTGTGGCCCTCTCATTGACGCCATTGCCATTAAGACCCTCTACCCTCCTAAGGCCTCCAATGATAATCTGGTGAAGAATGGGGATTTTGAAACTGGCCCATACGTGTTCCCCAACGCATCATCAGGAGTTTTGGTCCCACCGAATATCGAAGATGACCACTCTCCGATCCCCGGCTGGATGGTTGAATCTCTCAAGGCCGTCAAATACATCGATTCCGACCACTTCTCTGTTCCAAGCGGGAAACGCGCCGTTGAGTTAGTCGCCGGAAAAGAAAGCGCAATAGCCCAGATCGTCCGAACGATCCCTGGAAAAACCTACATCCTCTCGTTCGTCGTCGGCGATGCGAGCAACTCGTGCGAAGGATCTATGGTTGTTGAAGCTTTCGCCGGGAAAAACACACTGAAAGTGCCATATCAGTCGAAAGGCAACGGCGGGTCGAAACCGGCTGCACTGAAATTTCTGGCGGAATCGACGAGGACGAGAATTATGTTCTTGAGCACATTCTACACCATGCGAAGCGATGATTTCTCGTCGCTGTGTGGACCGGTGCTGGATAAAGTGAGATTGTTGAGCGTTAGAAACCCTAAAGCGTGA 1107 52.85 MQNAAVVFLSVLLSAAFHPALSLVDGYLPNGDFERGPKASDMNGTVVKGQYAIPEWEISGFVEYIKSGQKQGDMLLVVPEGAFAVRLGNEASIKQKIKVVKGLYYSITFSAARTCAQEERLNISVAPDWGVLPMQTLYNSNGWDLYAWAFQANSDEVVILIHNPGEEEDPACGPLIDAIAIKTLYPPKASNDNLVKNGDFETGPYVFPNASSGVLVPPNIEDDHSPIPGWMVESLKAVKYIDSDHFSVPSGKRAVELVAGKESAIAQIVRTIPGKTYILSFVVGDASNSCEGSMVVEAFAGKNTLKVPYQSKGNGGSKPAALKFLAESTRTRIMFLSTFYTMRSDDFSSLCGPVLDKVRLLSVRNPKA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4150832 4154721 + PI0027469.1 Cmetu03g1011 351155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1011 368 Pfam Protein of unknown function (DUF642) 193 359 IPR006946 -
Cmetu03g1011 368 Pfam Protein of unknown function (DUF642) 26 182 IPR006946 -
Cmetu03g1011 368 SUPERFAMILY Galactose-binding domain-like 26 182 IPR008979 -
Cmetu03g1011 368 Gene3D - 25 182 - -
Cmetu03g1011 368 PANTHER OS02G0527500 PROTEIN-RELATED 8 363 - -
Cmetu03g1011 368 Gene3D - 188 349 - -
Cmetu03g1011 368 FunFam DUF642 family protein 189 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1011 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1011 Cmetu-Chr3:4150832 Cmetu04g1836 Cmetu-Chr4:11140689 6.00E-114 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g438 Blo01g01373 . Bda01g00729 . Bpe02g01237 . . . Cmo05g00416 . . . . Car12g00302 Sed01g1353 . . Bhi04g01003 Tan02g2698 Cmetu03g1011 . Hepe10g0273 . Lcy13g1759 . . . . . . . . . . . . . . Cme03g01646 . . Bda01g00992 . . . Bma01g01286 . . . . . . . Car05g00339 . . . . . . . . . Cla08g01309 Cam08g1769 Cec08g1350 Cco08g1471 Clacu08g1465 . Cre08g1252 Lsi08g01173 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004712 2 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 5 0 1 1 1 1 1 1 1 1 2 1 2 42