Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1063 ATGGCTAATTTTTCAAGAGCTCTGTTTCTTTTCACGTTTCTCCTCTTCAGCTTCTCAGAAGCTAAAGAGATTTTAGTCGGAGGCAAATCCAATGCCTGGAAAATCCCTTCTTCTCAATCTCAATCTCTCAATCAGTGGGCTGAAACCTCTCGCTTTCGCATCGGGGACACTCTCGTGTGGAATTACGAAGAGGGGAAAGATTCGGTACTGAAAGTGACGAAGGCAGATTATGAAGCCTGCAATACCGAAAACCCAGAACAGAGATTCGAAGATGGGAAGACGAAAGTGGAGCTAGAGAAGCCAGGGCCATTTTATTTCATCAGTGGGGCAAAGGGTCACTGCGAGCAGGGCCAGAAGCTGATCGTTGTGGTTGTGACTCCTCGCCGGAGGTTCATCGGGATCTCTCCGGCTCCTTCACCGGCGGAAAGTGAGGGTCCGGCGGTTGCTCCGTCTAGTGGAGCTGCTAATTTGAAGGTTGGGTTTTTGGCGGTGGTTGTAGGAATTCTGGGTGTTGGAGTTGGGTTGGTTTGA 531 49.72 MANFSRALFLFTFLLFSFSEAKEILVGGKSNAWKIPSSQSQSLNQWAETSRFRIGDTLVWNYEEGKDSVLKVTKADYEACNTENPEQRFEDGKTKVELEKPGPFYFISGAKGHCEQGQKLIVVVVTPRRRFIGISPAPSPAESEGPAVAPSSGAANLKVGFLAVVVGILGVGVGLV 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4657792 4658609 + PI0019121.1 Cmetu03g1063 351207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1063 176 FunFam Early nodulin-like protein 1 21 129 - -
Cmetu03g1063 176 Gene3D - 20 128 IPR008972 -
Cmetu03g1063 176 PANTHER BLUE COPPER PROTEIN 23 140 IPR039391 GO:0009055
Cmetu03g1063 176 SUPERFAMILY Cupredoxins 21 125 IPR008972 -
Cmetu03g1063 176 ProSiteProfiles Phytocyanin domain profile. 22 126 IPR003245 GO:0009055
Cmetu03g1063 176 Pfam Plastocyanin-like domain 33 118 IPR003245 GO:0009055
Cmetu03g1063 176 CDD OsENODL1_like 22 124 IPR041846 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1063 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1063 Cmetu-Chr3:4657792 Cmetu06g0869 Cmetu-Chr6:25920044 8.30E-29 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g1793 . 24 166 Phytocyanin Superfamily AT1G48940 52.4 1.1e-36 150.2
Cmetu03g1063 . 15 169 Phytocyanin Superfamily AT2G25060 55.1 5.0e-45 177.9
Cmetu04g1271 . 13 179 Phytocyanin Superfamily AT5G15350 54.2 4.9e-50 194.5
Cmetu03g1063 . 16 171 Phytocyanin Superfamily AT4G31840 55.1 1.3e-45 179.9
Cmetu12g1793 . 24 166 Phytocyanin Superfamily AT1G48940 52.4 1.1e-36 150.2
Cmetu03g1063 . 9 170 Phytocyanin Superfamily AT5G25090 52.7 2.5e-39 159.1
Cmetu03g1063 . 15 169 Phytocyanin Superfamily AT2G25060 55.1 5.0e-45 177.9
Cmetu03g1063 . 16 171 Phytocyanin Superfamily AT4G31840 55.1 1.3e-45 179.9
Cmetu04g1271 . 13 179 Phytocyanin Superfamily AT5G15350 54.2 4.9e-50 194.5
Cmetu05g1906 . 29 224 Phytocyanin Superfamily AT1G08500 59.6 2.3e-63 239.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010533 1 1 0 0 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31