Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1073 ATGGGAAGTGTGAACAACAAAGGGAGACTATTCGGAACTCACCATAATCCTCCACTTTGCACTAGGTCGCATCAGATCGGGGCTTTGCTTCTAGTTTGCACCACCTTCTTCCTTACCCGTGCATTCGATCGATTGCTTCTTCCCTCCGCCGACAACTCCTTCAATGGTTTCCGTCAATCCCACTATGCCCTCCAATCAAACGACGATGGATCCATTTCGTGGCCGGAAAGAGGGTACGGTTCCCATCTCTCTCTCAAGATTTATGTCTACGACGAGACCGAAATTCAGGGGCTCAAAGCTTTGATGTATGGGAGGGACGGGAAGATCACTGCTGCTACTTGTTTGAAAGGCCAATGGGGGACTCAGGTGAAGATTCACAGATTGCTCCTACAGTCGAGATTTCGGACAAGAAAGAAAGAAGAGGCAGATTTTTTCTTTGTGCCTGCTTATGTTAAATGTGTTAGGATGCTAGGTGGTCTCAATGACAAGGAGATTAACGAAGCATATATACAGGTTTTAGGTCAAATGCCGTATCTCAGGCTCTCAGGGGGTCGTGACCACATATTTGTTTTCCCAAGTGGTGCAGGAGCTCACTTATTTAAATCTTGGGCGACTTACATAAACCGTTCCATAATTCTTACTCCTGAGGGTGATCGGACAGATAAGAAAGATTTTAGTGCTTTCAATACATGGAAAGATATCATCATTCCTGGCAATGTTGATGATGGAATGACTTCACATGGAGCTAAAATAGTCCAGCCTTTGCCTTTGTCTAAAAGGAAGCACTTGGCAAACTATTTAGGACGTGATCAAGGAAAAGTTGGTCGTCTAAAGTTGATAGAACTTGCAAAACAATTTCCTGAAAAGTTGGAATCTCCAGTTTTGAAGTTCAGTGGTCCTGAAAAATTGGGAAAGTTGGAGTATTTTGAGCACCTGCGCAACGCTAAGTTCTGTCTTGCTCCTCGTGGAGAATCATCTTGGACACTTCGTTTTTACGAGTCATTTTTCGTGGAGTGTGTACCCGTTATACTATCGGACCAAGTTGAATTGCCTTTCCAGAATGTAATTGACTACTCCCAGATCTCAATAAAATGGCCATCAAGCGAAATAGGCCCTCAACTGTTGGAGTACCTTGAGTCAATTCCAGATGAGACCATAGACGGGATGATAGCGCAAGGTAGACGAGTTAGGTGCCTATGGGTTTATGCCTCAGATTCAGAACCTTGCTCTACCATGCAAGGAATTCTATGGGAACTTCAGAGGAAAGTTCGGCAGTTTCACCAGTCAACTGAAACATTTTGGTTGCACAATGGATCTTTTGTAAATAGACAATTGGTCGAATTCTCAAAGTGGAAGCCTCCAATGCCTTTGCCTTGA 1377 44.01 MGSVNNKGRLFGTHHNPPLCTRSHQIGALLLVCTTFFLTRAFDRLLLPSADNSFNGFRQSHYALQSNDDGSISWPERGYGSHLSLKIYVYDETEIQGLKALMYGRDGKITAATCLKGQWGTQVKIHRLLLQSRFRTRKKEEADFFFVPAYVKCVRMLGGLNDKEINEAYIQVLGQMPYLRLSGGRDHIFVFPSGAGAHLFKSWATYINRSIILTPEGDRTDKKDFSAFNTWKDIIIPGNVDDGMTSHGAKIVQPLPLSKRKHLANYLGRDQGKVGRLKLIELAKQFPEKLESPVLKFSGPEKLGKLEYFEHLRNAKFCLAPRGESSWTLRFYESFFVECVPVILSDQVELPFQNVIDYSQISIKWPSSEIGPQLLEYLESIPDETIDGMIAQGRRVRCLWVYASDSEPCSTMQGILWELQRKVRQFHQSTETFWLHNGSFVNRQLVEFSKWKPPMPLP 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10177717 10180853 + PI0012031.1 Cmetu03g1073 351217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1073 458 Pfam Exostosin family 85 370 IPR040911 -
Cmetu03g1073 458 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 63 392 IPR004263 GO:0006486|GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1073 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1073 Cmetu-Chr3:10177717 Cmetu07g0503 Cmetu-Chr7:1824110 3.10E-19 dispersed
Cmetu01g2252 Cmetu-Chr1:9516067 Cmetu03g1073 Cmetu-Chr3:10177717 1.80E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1205 . . . . . . . . Cmo04g02538 Cmo15g00635 . . . . Sed11g1325 . Cpe13g00662 Bhi04g01824 Tan11g1197 Cmetu03g1073 . Hepe02g2758 . Lcy10g1308 Cla08g00659 Cam08g1089 Cec08g0674 Cco08g0783 Clacu08g0794 . Cre08g0597 . Cone7ag1431 . Cone20ag0405 . . . Cme03g00408 Blo17g00224 . . Bda13g01538 . Bpe14g00326 . Bma02g00284 . . . . . Car04g02335 Car15g00577 Cpe01g02097 . . . . . . . . . . . . . . . Lsi08g00518 . Chy03g00584 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006628 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38