Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1113 ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATCAAAGCTCTGACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCGAGTGAGCAATGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCAGAGCTCCCAGAACCTGCCCTTGGCATTAATTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTAGCGGTTCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGGTTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATTCAAAGCGGAGTTCCGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCAAAGGACGAAGAAGAGGAAGGCTTGGAAGAGGAAGATGAGGAAGAACATGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCAGACGAGTTCTGGATATGCTGTGACATATGTGAGAAATGGTTTCATGGGAAATGTGTTAAGATCACTCCGGCAAGAGCCGAGCACATTAAGCAGTACAAATGTCCTTCTTGCAGCAACAAGAGAATCCGACCCTGA 762 42.78 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNSKRSSEPQIKNTKAVQSKDEEEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5955000 5960396 - PI0016017.1 Cmetu03g1113 351257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1113 253 FunFam PHD finger alfin-like protein 192 248 - -
Cmetu03g1113 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Cmetu03g1113 253 CDD PHD_AL_plant 199 249 IPR044104 -
Cmetu03g1113 253 SMART PHD_3 199 247 IPR001965 -
Cmetu03g1113 253 PANTHER CPG BINDING PROTEIN 8 252 IPR045104 GO:0006355|GO:0042393
Cmetu03g1113 253 MobiDBLite consensus disorder prediction 145 174 - -
Cmetu03g1113 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Cmetu03g1113 253 Pfam PHD-finger 200 249 IPR019787 -
Cmetu03g1113 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cmetu03g1113 253 MobiDBLite consensus disorder prediction 145 193 - -
Cmetu03g1113 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Cmetu03g1113 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1113 K26274 - - csv:101208889 467.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2478 Cmetu-Chr1:28616521 Cmetu03g1113 Cmetu-Chr3:5955000 2.60E-108 dispersed
Cmetu02g1001 Cmetu-Chr2:2432542 Cmetu03g1113 Cmetu-Chr3:5955000 3.20E-49 dispersed
Cmetu03g1113 Cmetu-Chr3:5955000 Cmetu06g1618 Cmetu-Chr6:23100182 2.70E-97 dispersed
Cmetu03g1113 Cmetu-Chr3:5955000 Cmetu08g0029 Cmetu-Chr8:22903165 1.60E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g139 Blo01g01452 Blo12g01023 . . . Bpe02g00502 . Bma01g02201 Cmo05g00430 Cmo12g00597 . Cma05g00416 . Car12g00605 Sed08g1791 Cpe07g00574 . Bhi04g01504 Tan02g1591 Cmetu03g1113 . Hepe08g1423 . Lcy13g2215 . . . . . . . . . . . . . . . Blo17g00276 . . Bda13g01589 Bpe14g00276 . . Bma02g00545 . . . . Cma12g00657 . Car05g00354 Cpe11g00358 . . . . . . . . Cla08g00996 Cam08g1443 Cec08g1020 Cco08g1144 . . Cre08g0932 Lsi08g00842 . Chy03g00663 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g1618 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.7 2.1e-113 405.6
Cmetu03g1113 . 9 250 Alfin-like Transcription Factor Family AT1G14510 74.4 2.3e-96 349.0
Cmetu01g2478 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 1.2e-92 336.7
Cmetu08g0029 . 3 237 Alfin-like Transcription Factor Family AT1G14510 59.2 2.1e-78 289.3
Cmetu10g1328 . 8 240 Alfin-like Transcription Factor Family AT1G14510 57.3 2.3e-72 269.2
Cmetu03g1113 . 1 252 Alfin-like Transcription Factor Family AT5G26210 77.2 2.6e-108 388.7
Cmetu01g2478 . 1 250 Alfin-like Transcription Factor Family AT5G26210 63.7 1.4e-96 349.7
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 8.2e-94 340.5
Cmetu10g1328 . 7 242 Alfin-like Transcription Factor Family AT5G26210 61.9 1.5e-79 293.1
Cmetu08g0029 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.1 2.0e-79 292.7
Cmetu03g1113 . 1 252 Alfin-like Transcription Factor Family AT3G42790 74.0 5.2e-101 364.4
Cmetu01g2478 . 1 250 Alfin-like Transcription Factor Family AT3G42790 63.7 8.6e-96 347.1
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT3G42790 72.0 2.4e-90 328.9
Cmetu08g0029 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.3 9.5e-79 290.4
Cmetu10g1328 . 7 242 Alfin-like Transcription Factor Family AT3G42790 63.1 3.6e-78 288.5
Cmetu08g0029 . 1 240 Alfin-like Transcription Factor Family AT5G05610 75.1 2.1e-107 385.6
Cmetu10g1328 . 1 242 Alfin-like Transcription Factor Family AT5G05610 70.2 4.2e-100 361.3
Cmetu03g1113 . 8 252 Alfin-like Transcription Factor Family AT5G05610 65.3 2.1e-91 332.4
Cmetu01g2478 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.5 1.8e-90 329.3
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.2e-83 306.6
Cmetu08g0029 . 43 240 Alfin-like Transcription Factor Family AT3G11200 77.2 9.5e-89 323.6
Cmetu10g1328 . 43 242 Alfin-like Transcription Factor Family AT3G11200 70.8 7.3e-81 297.4
Cmetu03g1113 . 44 252 Alfin-like Transcription Factor Family AT3G11200 67.5 2.1e-75 279.3
Cmetu01g2478 . 44 250 Alfin-like Transcription Factor Family AT3G11200 66.2 3.5e-75 278.5
Cmetu06g1618 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.0 2.9e-69 258.8
Cmetu06g1618 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.6e-76 283.1
Cmetu03g1113 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.7e-65 245.0
Cmetu01g2478 . 10 160 Alfin-like Transcription Factor Family AT2G02470 76.8 5.7e-63 238.0
Cmetu08g0029 . 3 135 Alfin-like Transcription Factor Family AT2G02470 72.6 6.4e-54 208.0
Cmetu10g1328 . 8 136 Alfin-like Transcription Factor Family AT2G02470 72.5 9.2e-53 204.1
Cmetu03g1113 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 7.0e-74 273.9
Cmetu01g2478 . 1 162 Alfin-like Transcription Factor Family AT5G20510 76.4 5.2e-69 257.7
Cmetu06g1618 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 8.3e-67 250.4
Cmetu08g0029 . 7 157 Alfin-like Transcription Factor Family AT5G20510 63.1 4.4e-52 201.4
Cmetu10g1328 . 7 136 Alfin-like Transcription Factor Family AT5G20510 68.9 1.3e-51 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7576 PF12165 Alfin 2.10E-69 No_clan Cmetu TF