Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1121 ATGGCAGCGCCCAAGCCTCGCACCACTCGGTCCAGGTCTCACAGGGATATTCCTGATTTGGAGAAGATGGACGCTGCTTACAGTTGGGACGCCCTTGAATGGACCAAAATTGAGCCTGTTCCGCGGTCGGTTTCGCGTGTCAACTTGGATTGCTTACTTGAGGCTGAACAAGTGATTGCTGAGGGCTACGGTGTTGTTCTTGTGAATACTGATGAGGCGGGTACCTTGTTTGTAACCAATTTTCGTCTTCTATTTCTAAGTGAAGGAACCATGGATGTTATTTCCCTTGGCACTATACCACTGGCGACAATTGATAAATTCAACAAAATTGTTGTGAAGACAAATGCTGTCTCTCGCCAATCTGAAAAGTCTTCACCATCTAGGCGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATTGTCTTTGGTTTCCGTCCAAGAACAAAACAGAGGCGTAAAGTATATGATGCATTACTAAGGTGTATGAAACCGGCAAGAATATGGGATCTATATGCATTCCAGTGCGGGCCATCGAAGTACAGTAATACAGACCCAAAAGTTCGTTTGCTAAATGAGTATTTTCGGCTTCTTGGAAAGGGTTCCCAACATGCATCAATGAGTATGATTGAAGATGGATCATTTACATTGTCCAATGAATTGTGGAGAATAACTAAAATCAATTCCAATTATACTCTGTGTCAGAGTTATCCATTTGCATTGGTTGTTCCCAAACACTTTAGTGATGAAGAGATGTTGCAGGCTTCTACCTTTCGGGCTAGATGTCGTTTGCCTGTTGTTTCGTGGTGCAATCCTGGGACTGGAGCTGTTCTTGCACGTTCATCTCAACCTTTAGTTGGTCTTATGATGAATATGAGAAGTAATACCGATGAAAAGCTTGTTGCTGCGCTTTGCTCGAATCTTGCTGGTGTTCGAGGGTCATCACGTAGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCAAATGGAGCCATGGGAGGTGGCTCAGAGTCTTCATCAAATTATTTTCAATCTGAGATAGTCTTTTTTGGGATTGACAACATACATGCAATGAGGGAAAGTCTTACTCGGCTAAGAGAGTACTTGGATACACATGGTGAAAAATCATCTGATGGAATGTCATCATTCTTGAGACATGGTGGATGGACTTGGGGTGGGGGTAATCTTAGTAGCATGTCTGCATCTGTATCAACTTTGGGAGATAGTGGTTGGTTAATCCATGTTCAAAGCGTCCTGGCTGGTTCAGCATGGATAGCTGCACGTGTTGCTTTGGAAAATGCAACGGTGCTAGTTCATTGCAGTGATGGCTGGGACAGAACAACACAACTAGTTTCACTTGCTAGCTTACTGCTTGATCCATATTATCGGACATTTGCTGGATTTCAGGCACTGGTTGAAAAGGATTGGCTAGCATTTGGTCATCCTTTCTCAGATCGATCTGGCATGCCAACCATATCGGGAAGTGGTAACATGCCATATGAACTATCTAGGCAGTCTTCAACTGGAAGTTTTTCTTCTTCACCTATGCGTCAGTCATCTGGAGCATTCATATCTCAAGCTTCCAGTCCTCCTCATGCACAAACATCCAACAACTGTTCTCCCATATTTTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGGATGTATCCCTTTGCTTTTGAGTTCTCTTCAGCATTCCTTGTGGATCTGTTGGATTGTATGCTTTCCTGTCGTTTTGGGAACTTCTTATGCAATTGTGAGAAGGAGCGTCAGCAATGTGCAGTTTCTGAAGTTTGCGGCTGTCTATGGGCATATTTAGCCGATTTACGAGCCTCGGAAGGAAGTTCACATGTGCATTATAACCTTTTCTATGATCCAACGATTCCTTCCAAACATGAAGGTGCTCTCTTACCTCCTGCAGCAGCTCTAGCTCCAACTCTCTGGCCACAATTCCATCTTCGTTGGGCTTGCCCAAAAGAATCCCAAGCTGGGGAACTTGAAGTCAAATGCAGGAAAATGGCTATACAATTATCTGAAGTGCAGAAGGACAAAGAAATAGCCGAGAGAAAAGCCCAGGAGATGACGGCTGCCATGGAATCATTAAAATCAGAGTTGCAAAACGAGAAACAGTCAAGTATATCAGCTAGGAACGTTGCAAAAAGTGCAAGCAAAGAATGTGAAGCCATAAAGAGAGCAATTCAGTCTCTAGGTTGCAAGGTTCAAGTCTCTAGTATGAAAAGTCATCCTGCTTCAAGAAGGACTTCACATCGTTCACTGCCATCCCCTAGTGAAGAGAATGACCTCTCCCTTTCTATAACTGTTACAGCAGATGATGTGCCAAGTAACCCCCTCAGTCACATCTGTGAAGCTCTTTGCCCATTACGCACTCGGGATGGAGGGTGCCGGTGGCCTGATGCTGGTTGTGCTCATTTGGGTAGCCAATTTATTGGAATGAAGGCAAATTTCGATGCATTCGATCAACTATCCATATATGATGGCTATTTCAAGCCAGAGTGA 2532 43.76 MAAPKPRTTRSRSHRDIPDLEKMDAAYSWDALEWTKIEPVPRSVSRVNLDCLLEAEQVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGTMDVISLGTIPLATIDKFNKIVVKTNAVSRQSEKSSPSRRLLQVIGKDMRIIVFGFRPRTKQRRKVYDALLRCMKPARIWDLYAFQCGPSKYSNTDPKVRLLNEYFRLLGKGSQHASMSMIEDGSFTLSNELWRITKINSNYTLCQSYPFALVVPKHFSDEEMLQASTFRARCRLPVVSWCNPGTGAVLARSSQPLVGLMMNMRSNTDEKLVAALCSNLAGVRGSSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESLTRLREYLDTHGEKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALENATVLVHCSDGWDRTTQLVSLASLLLDPYYRTFAGFQALVEKDWLAFGHPFSDRSGMPTISGSGNMPYELSRQSSTGSFSSSPMRQSSGAFISQASSPPHAQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFLCNCEKERQQCAVSEVCGCLWAYLADLRASEGSSHVHYNLFYDPTIPSKHEGALLPPAAALAPTLWPQFHLRWACPKESQAGELEVKCRKMAIQLSEVQKDKEIAERKAQEMTAAMESLKSELQNEKQSSISARNVAKSASKECEAIKRAIQSLGCKVQVSSMKSHPASRRTSHRSLPSPSEENDLSLSITVTADDVPSNPLSHICEALCPLRTRDGGCRWPDAGCAHLGSQFIGMKANFDAFDQLSIYDGYFKPE 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7462504 7484072 - PI0025388.1 Cmetu03g1121 351265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1121 843 ProSiteProfiles Myotubularin phosphatase domain. 184 657 IPR010569 -
Cmetu03g1121 843 Gene3D - 63 163 IPR011993 -
Cmetu03g1121 843 PANTHER MYOTUBULARIN-RELATED 25 765 IPR030564 -
Cmetu03g1121 843 Coils Coil 675 716 - -
Cmetu03g1121 843 ProSitePatterns Tyrosine specific protein phosphatases active site. 442 452 IPR016130 GO:0016311|GO:0016791
Cmetu03g1121 843 MobiDBLite consensus disorder prediction 749 772 - -
Cmetu03g1121 843 CDD PTP-MTM-like 262 556 - -
Cmetu03g1121 843 SUPERFAMILY PH domain-like 51 176 - -
Cmetu03g1121 843 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 216 661 IPR029021 -
Cmetu03g1121 843 Pfam Myotubularin-like phosphatase domain 172 596 IPR010569 -
Cmetu03g1121 843 MobiDBLite consensus disorder prediction 506 533 - -
Cmetu03g1121 843 SMART gram2001c 43 111 IPR004182 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1121 K18081 - - csv:101204839 1639.78
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu01g1484 . 117 377 Protein tyrosine phosphatase (PTP) family AT1G71860 70.2 1.9e-109 392.9
Cmetu02g0933 . 109 926 Protein tyrosine phosphatase (PTP) family AT5G23720 65.9 1.3e-295 1012.7
Cmetu11g1536 . 20 167 Protein tyrosine phosphatase (PTP) family AT3G06110 56.4 1.6e-42 169.5
Cmetu05g0500 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.3e-71 265.4
Cmetu10g0979 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.8 1.3e-116 416.4
Cmetu10g1171 . 29 282 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 1.2e-109 393.3
Cmetu04g0638 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 2.2e-203 705.3
Cmetu11g0212 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 1.5e-74 276.6
Cmetu05g0487 . 45 241 Protein tyrosine phosphatase (PTP) family AT2G32960 64.2 1.7e-70 263.1
Cmetu02g1280 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 5.8e-55 211.5
Cmetu06g0363 . 8 304 Protein tyrosine phosphatase (PTP) family AT2G35680 60.5 1.2e-100 363.6
Cmetu05g1458 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.5e-79 293.5
Cmetu06g0363 . 8 183 Protein tyrosine phosphatase (PTP) family AT5G56610 52.3 1.3e-43 173.3
Cmetu11g0212 . 38 214 Protein tyrosine phosphatase (PTP) family AT4G03960 73.4 3.2e-77 285.0
Cmetu05g0487 . 43 241 Protein tyrosine phosphatase (PTP) family AT4G03960 62.3 3.9e-67 251.5
Cmetu02g1280 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.1e-57 219.2
Cmetu02g1280 . 7 200 Protein tyrosine phosphatase (PTP) family AT3G02800 69.4 1.6e-79 292.7
Cmetu11g0212 . 41 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 2.7e-55 212.2
Cmetu05g0487 . 39 230 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 4.4e-50 194.9
Cmetu10g0718 . 1 175 Protein tyrosine phosphatase (PTP) family AT3G55270 59.9 1.9e-53 208.0
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu01g2130 . 11 610 Protein tyrosine phosphatase (PTP) family AT3G19420 64.8 3.2e-221 765.0
Cmetu08g1753 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.5e-197 684.5
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu11g0267 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.0 9.1e-72 267.3
Cmetu06g0725 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.4 7.3e-113 404.1
Cmetu08g1543 . 1 642 Protein tyrosine phosphatase (PTP) family AT3G09100 66.9 2.4e-262 901.7
Cmetu08g1543 . 5 642 Protein tyrosine phosphatase (PTP) family AT5G01290 62.4 2.5e-235 812.0
Cmetu08g1543 . 86 642 Protein tyrosine phosphatase (PTP) family AT5G28210 54.3 2.0e-173 606.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 3 1 1 35