Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1162 ATGGGTGGCGGTGGCGGTGGCGGTGGCGGTGCTCCGAGTAGGGAGTTAGATCAAACTCCGACATGGGCCGTTGCCGCTGTTTGTGCAGTCATCATTCTCATTTCCATCATATTGGAAAAGGTTCTTCACATGGTTGGAGAGCTATTTCAAAAAAGGAAAAAGAAAGCCTTGTATGAAGCACTTGAGAAAGTTAAAGGAGAGCTTATGGTTTTAGGATTCATTTCTTTGCTCTTAACATTTGGGCAAAATTATATTGCTAAAGTCTGTATACCCTCAAAGTATGCAAATACTATGTTGCCTTGCCCTTATAGAGGGAGTTTACCTAAAAACTCCCATGGCACCGAGCCCGAAGATCATGATGAAGAGACTACAGATCACCATCGTAGGCTTCTTTGGTATGAGCATCGACGTCTAGCTGGCGGTGGTCCCGTAGAAGGTTGCAAATCAGGGTATACACAACTTATATCTCTAAATGGTTTGCATCAAATACATATCTTCATCTTCTTTCTAGCCGTTCTCCATGTTGTATTTAGCGCCATAACGATGACTCTCGGAAGATTGAAAATTCGTGGGTGGAAGGTATGGGAAAGACAGACCGAACAAGAACATGATGCCATGAACGATCCTACAAGGTTTAGACTTACTCACGAGACATCCTTTGTAAGAGATCACAGCAGTTTTTGGACCAAAACACCCCTCTCCTTTTACTTTGTATGCTTCTGGAGGCAATTCTTTAGGTCCGTTAGTAGGCCAGATTACTTGTCCCTTAGACATGGTTTTGTCACCGTCCATTTAGCCCCTGGGAGTAAATTTAACTTTCAAAAGTACATCAAAAGGTCATTAGAAGATGACTTCAAGGTGGTCGTGGGAATAAGTCCTCTGCTATGGGCATCAATGGTGCTTTTTCTGCTTCTCAATGTTAGTGGGTGGCAAGTTATGTTATGGGTGTCTATATTTCCTCTCGTGGTGATCTTATCTGTTGGAACGAAGTTGCAAGGAATTATAACGCAAATGGCTCTTGAAATCAAAGAAAGACATGCAGTGGTTCAAGGGATTCCCCTTGTTCAAGTCTCTGATAGACATTTTTGGTTTAGTTGGCCTGTTTTGGTTCTTTATCTCATCCATTATGTCCTTTTTCAGAATGCATTTGAGATTACATATTTCTTTTGGATATGGTATGAATTTGGGTTGAGATCATGCTTTCATGACAATTTTGATCTTATTATCGTGAGAGTTGCCCTAGGGGTTGGAGTCCAGATTTTATGCAGTTACATTACACTCCCATTATATGCTCTTGTAACTCAGATGGGATCGACAATGAAGAAATCCATATTTGATGAACAAACTTCAAAAGCATTGAAGCAATGGCATAGAAGTGCTTTAAAGAAAAAGAACGAAGGAGGAAAGCCTGAATCAACGCCGATGCGAACTTTAGGCGGCGGCGGCGGTGGTGGAGGAAGCCCTCCTGAGTCACCGATGCAATCTCAGCATGAATTCCAACATCGATCGGTCACTCAACCGTCACCAACCGACGTCGAAGCCTCCGCTCTTCCTTCAGCCAACATAATGGCTACCGTTGATCTCCAACAACAACAACAAAACTATGCTAATCGTGACTTGTTGAGTTGA 1629 42.66 MGGGGGGGGGAPSRELDQTPTWAVAAVCAVIILISIILEKVLHMVGELFQKRKKKALYEALEKVKGELMVLGFISLLLTFGQNYIAKVCIPSKYANTMLPCPYRGSLPKNSHGTEPEDHDEETTDHHRRLLWYEHRRLAGGGPVEGCKSGYTQLISLNGLHQIHIFIFFLAVLHVVFSAITMTLGRLKIRGWKVWERQTEQEHDAMNDPTRFRLTHETSFVRDHSSFWTKTPLSFYFVCFWRQFFRSVSRPDYLSLRHGFVTVHLAPGSKFNFQKYIKRSLEDDFKVVVGISPLLWASMVLFLLLNVSGWQVMLWVSIFPLVVILSVGTKLQGIITQMALEIKERHAVVQGIPLVQVSDRHFWFSWPVLVLYLIHYVLFQNAFEITYFFWIWYEFGLRSCFHDNFDLIIVRVALGVGVQILCSYITLPLYALVTQMGSTMKKSIFDEQTSKALKQWHRSALKKKNEGGKPESTPMRTLGGGGGGGGSPPESPMQSQHEFQHRSVTQPSPTDVEASALPSANIMATVDLQQQQQNYANRDLLS 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6486227 6492789 + PI0022389.1 Cmetu03g1162 351306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1162 542 Pfam Mlo family 14 474 IPR004326 GO:0006952|GO:0016020
Cmetu03g1162 542 PANTHER MLO-LIKE PROTEIN 1 13 524 IPR004326 GO:0006952|GO:0016020
Cmetu03g1162 542 MobiDBLite consensus disorder prediction 461 518 - -
Cmetu03g1162 542 MobiDBLite consensus disorder prediction 489 515 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1162 K08472 - - csv:101208890 974.541
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1162 Cmetu-Chr3:6486227 Cmetu04g2438 Cmetu-Chr4:3304624 5.30E-151 dispersed
Cmetu03g1162 Cmetu-Chr3:6486227 Cmetu06g2483 Cmetu-Chr6:30787755 2.80E-160 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1218 . . . . . . . . . . . . . . Sed14g1259 . . Bhi03g00753 Tan03g2178 Cmetu03g1162 . Hepe04g1676 . . . . . . . . . . . . . . . . . Blo05g00663 . . . . . . . . . . Cma03g00619 Cma07g00379 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1699 . 3 531 MLO family AT5G53760 71.1 1.1e-215 746.5
Cmetu07g1697 . 5 552 MLO family AT5G53760 69.2 7.2e-215 743.8
Cmetu12g1399 . 10 504 MLO family AT3G45290 52.7 1.7e-138 490.0
Cmetu09g1699 . 3 531 MLO family AT1G26700 69.3 3.4e-209 724.9
Cmetu07g1697 . 1 532 MLO family AT1G26700 67.9 3.1e-207 718.4
Cmetu10g0829 . 7 499 MLO family AT2G39200 68.0 3.9e-192 668.3
Cmetu11g1884 . 10 525 MLO family AT2G39200 61.8 9.9e-180 627.1
Cmetu12g0062 . 8 501 MLO family AT2G39200 58.1 1.1e-170 597.0
Cmetu10g0829 . 7 408 MLO family AT1G61560 65.7 9.7e-153 537.0
Cmetu11g1884 . 10 400 MLO family AT1G61560 66.5 1.3e-152 536.6
Cmetu12g0062 . 1 381 MLO family AT1G61560 60.4 4.4e-137 485.0
Cmetu06g2483 . 6 488 MLO family AT2G17430 61.9 1.0e-162 570.5
Cmetu04g2438 . 11 453 MLO family AT2G17430 59.3 2.6e-153 539.3
Cmetu03g1162 . 2 479 MLO family AT2G17430 57.8 4.8e-152 535.0
Cmetu06g2483 . 4 575 MLO family AT2G17480 58.9 2.1e-177 619.4
Cmetu04g2438 . 29 525 MLO family AT2G17480 59.1 1.2e-172 603.6
Cmetu03g1162 . 14 464 MLO family AT2G17480 61.9 3.2e-157 552.4
Cmetu11g1884 . 11 447 MLO family AT2G17480 50.6 5.0e-118 422.2
Cmetu03g1162 . 1 380 MLO family AT1G42560 61.4 2.6e-128 455.7
Cmetu06g2483 . 12 386 MLO family AT1G42560 55.8 1.4e-113 406.8
Cmetu04g2438 . 29 359 MLO family AT1G42560 52.5 1.4e-102 370.2
Cmetu11g1043 . 6 419 MLO family AT4G24250 54.2 8.3e-117 417.5
Cmetu11g0990 . 15 430 MLO family AT4G24250 50.8 4.4e-110 395.2
Cmetu06g2483 . 6 386 MLO family AT5G65970 65.2 2.9e-140 495.7
Cmetu04g2438 . 9 360 MLO family AT5G65970 60.0 2.9e-124 442.6
Cmetu03g1162 . 11 380 MLO family AT5G65970 59.0 1.3e-121 433.7
Cmetu11g1884 . 7 365 MLO family AT5G65970 51.2 1.0e-97 354.4
Cmetu03g1162 . 14 542 MLO family AT2G33670 60.4 9.2e-174 607.1
Cmetu06g2483 . 19 469 MLO family AT2G33670 58.1 1.4e-142 503.4
Cmetu04g2438 . 19 465 MLO family AT2G33670 55.8 2.3e-140 496.1
Cmetu10g0829 . 64 520 MLO family AT1G11310 64.1 9.1e-169 590.5
Cmetu11g1884 . 48 515 MLO family AT1G11310 62.2 2.0e-163 572.8
Cmetu12g0062 . 63 471 MLO family AT1G11310 59.3 5.4e-145 511.5
Cmetu11g1043 . 5 509 MLO family AT2G44110 58.0 7.0e-166 580.9
Cmetu11g1043 . 1 485 MLO family AT4G02600 75.9 5.2e-212 734.2
Cmetu06g0876 . 3 507 MLO family AT1G11000 73.3 1.5e-212 736.1
Cmetu07g0921 . 38 172 MLO family AT1G11000 71.1 1.5e-47 188.0
Cmetu11g1043 . 1 485 MLO family AT4G02600 75.9 5.2e-212 734.2
Cmetu10g0829 . 64 520 MLO family AT1G11310 64.1 9.1e-169 590.5
Cmetu11g1884 . 48 515 MLO family AT1G11310 62.2 2.0e-163 572.8
Cmetu12g0062 . 63 471 MLO family AT1G11310 59.3 5.4e-145 511.5
Cmetu12g1399 . 10 504 MLO family AT3G45290 52.7 1.7e-138 490.0
Cmetu06g0876 . 3 507 MLO family AT1G11000 73.3 1.5e-212 736.1
Cmetu07g0921 . 38 172 MLO family AT1G11000 71.1 1.5e-47 188.0
Cmetu03g1162 . 14 542 MLO family AT2G33670 60.4 9.2e-174 607.1
Cmetu06g2483 . 19 469 MLO family AT2G33670 58.1 1.4e-142 503.4
Cmetu04g2438 . 19 465 MLO family AT2G33670 55.8 2.3e-140 496.1
Cmetu10g0829 . 7 408 MLO family AT1G61560 65.7 9.7e-153 537.0
Cmetu11g1884 . 10 400 MLO family AT1G61560 66.5 1.3e-152 536.6
Cmetu12g0062 . 1 381 MLO family AT1G61560 60.4 4.4e-137 485.0
Cmetu06g2483 . 6 488 MLO family AT2G17430 61.9 1.0e-162 570.5
Cmetu04g2438 . 11 453 MLO family AT2G17430 59.3 2.6e-153 539.3
Cmetu03g1162 . 2 479 MLO family AT2G17430 57.8 4.8e-152 535.0
Cmetu06g2483 . 4 575 MLO family AT2G17480 58.9 2.1e-177 619.4
Cmetu04g2438 . 29 525 MLO family AT2G17480 59.1 1.2e-172 603.6
Cmetu03g1162 . 14 464 MLO family AT2G17480 61.9 3.2e-157 552.4
Cmetu11g1884 . 11 447 MLO family AT2G17480 50.6 5.0e-118 422.2
Cmetu03g1162 . 1 380 MLO family AT1G42560 61.4 2.6e-128 455.7
Cmetu06g2483 . 12 386 MLO family AT1G42560 55.8 1.4e-113 406.8
Cmetu04g2438 . 29 359 MLO family AT1G42560 52.5 1.4e-102 370.2
Cmetu06g2483 . 6 386 MLO family AT5G65970 65.2 2.9e-140 495.7
Cmetu04g2438 . 9 360 MLO family AT5G65970 60.0 2.9e-124 442.6
Cmetu03g1162 . 11 380 MLO family AT5G65970 59.0 1.3e-121 433.7
Cmetu11g1884 . 7 365 MLO family AT5G65970 51.2 1.0e-97 354.4
Cmetu09g1699 . 3 531 MLO family AT5G53760 71.1 1.1e-215 746.5
Cmetu07g1697 . 5 552 MLO family AT5G53760 69.2 7.2e-215 743.8
Cmetu10g0829 . 7 499 MLO family AT2G39200 68.0 3.9e-192 668.3
Cmetu11g1884 . 10 525 MLO family AT2G39200 61.8 9.9e-180 627.1
Cmetu12g0062 . 8 501 MLO family AT2G39200 58.1 1.1e-170 597.0
Cmetu11g1043 . 6 419 MLO family AT4G24250 54.2 8.3e-117 417.5
Cmetu11g0990 . 15 430 MLO family AT4G24250 50.8 4.4e-110 395.2
Cmetu09g1699 . 3 531 MLO family AT1G26700 69.3 3.4e-209 724.9
Cmetu07g1697 . 1 532 MLO family AT1G26700 67.9 3.1e-207 718.4
Cmetu11g1043 . 5 509 MLO family AT2G44110 58.0 7.0e-166 580.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000765 3 4 3 4 2 3 4 3 3 3 2 3 4 3 3 4 2 3 4 3 3 3 3 3 3 3 2 6 2 2 93