Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1194 ATGAAGATTCAGTGTGATGTTTGTGAAAAAGGGGATGCGGCGGTCTTCTGCACGGCGGATGAGGCGGCGCTCTGTAATCTTTGTGATCACCGTGTCCACCATGCGAATAAGCTTGCTTCGAAGCACCGACGGTTTTCTTTGCTCCGTCCTGATGCTGGGGAGGCTCCCGTTTGCGACGTCTGCAAGGAGCGGCGAGGGTTTTTGTTTTGTCAACAAGATAGAGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCGGCTAATGAACTCACTAAGAAGCACGATAGGTTTCTTCTAACTGGGATTAAGCTTTCCGCCAGCGCTGCTCTGTACGCGCCACCTCCATCCGGCGAGAAACCAATTGGGAGTGGTGGTCGCGTTGTTTCTATATCTAAGTCAAAGGGGTCTGTCAAGAAAGCAGCTGCGGTTTCCAAGGCCCCAACGATATGCACTCCAAGTGTTTGTGTTAATGCCCCAACGAACATAACTCCAGCGGCAGTAGTGAACAAAGGGGGTGGAGGTCAGATTGCGACGAGCGGAGGTGGATCGGCGAGTAGCATATCGGAGTATTTGATGGAGACGCTTCCTGGGTGGCACTTTGAAGACTTTCTTGATTCCTCTGTCTCTCCCCCTTTTGTGGAGGTTTGTTTGTCACTATTACTGTTACTATTTGAGTGTGAAGTTGATCATCAGTTTCGTTTGAGGAATGTTTTTATGTTTACTCTTTTTTTTCAGTTTGATGATGGGATAGGATTTCCATTTGTGGAAGGTGATTTGAATGGTTGTTTTTCATCGTCGGAACGTTTAGAGCTTTGGGTCCCTCAGGGGCCACCACCGGCGCTGTATAATTCAGGATTAATGATGAATAATGGATTGAAGGACACAAAGGAATTGGGAGTAAATTCATCAAAAGTCAATAGAGTGTGGACAGATGATGGTTTCACTGTGCCACAGATCACAAGTACAGCCCCATCTGCAGGCTTTAAGAGATCCAGACCTTTTTGGTAA 1011 47.18 MKIQCDVCEKGDAAVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLRPDAGEAPVCDVCKERRGFLFCQQDRAILCRECDDPIHSANELTKKHDRFLLTGIKLSASAALYAPPPSGEKPIGSGGRVVSISKSKGSVKKAAAVSKAPTICTPSVCVNAPTNITPAAVVNKGGGGQIATSGGGSASSISEYLMETLPGWHFEDFLDSSVSPPFVEVCLSLLLLLFECEVDHQFRLRNVFMFTLFFQFDDGIGFPFVEGDLNGCFSSSERLELWVPQGPPPALYNSGLMMNNGLKDTKELGVNSSKVNRVWTDDGFTVPQITSTAPSAGFKRSRPFW 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2172675 2174739 - PI0012247.2 Cmetu03g1194 351338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1194 336 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cmetu03g1194 336 CDD Bbox1_BBX-like 5 47 - -
Cmetu03g1194 336 CDD Bbox1_BBX-like 57 100 - -
Cmetu03g1194 336 Gene3D Classic Zinc Finger 1 95 - -
Cmetu03g1194 336 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cmetu03g1194 336 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmetu03g1194 336 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmetu03g1194 336 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 323 - -
Cmetu03g1194 336 FunFam B-box zinc finger protein 21 1 98 - -
Cmetu03g1194 336 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1194 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1194 Cmetu-Chr3:2172675 Cmetu11g0030 Cmetu-Chr11:711908 1.50E-31 dispersed
Cmetu01g0421 Cmetu-Chr1:2256273 Cmetu03g1194 Cmetu-Chr3:2172675 2.10E-41 transposed
Cmetu01g0740 Cmetu-Chr1:5816443 Cmetu03g1194 Cmetu-Chr3:2172675 9.20E-46 wgd
Cmetu11g0516 Cmetu-Chr11:27843886 Cmetu03g1194 Cmetu-Chr3:2172675 8.80E-42 wgd
Cmetu03g1194 Cmetu-Chr3:2172675 Cmetu04g0320 Cmetu-Chr4:3868095 7.90E-20 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0258 . 6 337 C2C2-CO-like Transcription Factor Family AT5G15850 50.9 4.5e-42 169.1
Cmetu03g0258 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.4 8.4e-84 307.8
Cmetu02g0351 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.5 1.3e-57 220.7
Cmetu02g0351 . 5 375 C2C2-CO-like Transcription Factor Family AT5G57660 53.4 5.2e-70 261.9
Cmetu03g0258 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 50.1 3.4e-53 206.1
Cmetu11g0233 . 97 510 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 2.5e-91 332.8
Cmetu01g0155 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 2.6e-88 322.8
Cmetu11g0233 . 97 510 C2C2-CO-like Transcription Factor Family AT5G48250 55.7 6.2e-90 328.2
Cmetu01g0155 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 3.2e-86 315.8
Cmetu11g0233 . 97 510 C2C2-CO-like Transcription Factor Family AT5G48250 55.7 6.2e-90 328.2
Cmetu01g0155 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 3.2e-86 315.8
Cmetu01g0740 . 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 53.8 6.8e-48 188.3
Cmetu11g0516 . 1 175 C2C2-CO-like Transcription Factor Family AT1G75540 54.0 6.3e-46 181.8
Cmetu07g0164 . 1 297 C2C2-CO-like Transcription Factor Family AT1G78600 50.5 3.9e-77 285.4
Cmetu07g1596 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 1.0e-55 213.4
Cmetu04g0320 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 6.4e-50 194.1
Cmetu07g1596 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 2.6e-57 218.8
Cmetu04g0320 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 2.0e-49 192.6
Cmetu01g0740 . 1 204 C2C2-CO-like Transcription Factor Family AT4G39070 57.5 1.9e-52 203.0
Cmetu03g1194 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.9 6.5e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004397 2 1 1 2 2 1 1 2 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 2 3 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7582 PF00643 zf-B_box 6.30E-06 No_clan Cmetu TR