Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1212 ATGGCAGCTTTTGCTCTCTCAAATTACACTCTCTTTTCTCCTTGTCCTTCTTCTCCATTCCTTTCTTCTTCCTCTAAAACCCTAGAATCCACAACCCCTTTTTACCAACCTCTTCATCTCCTTCATAATCCTCGTCTTTGTAACCCATTATTTACTTTCTCTCCCACCTCCTCTTCTTCTCCACTTACACGTTCTTTCGCACCCTGTCTTTCTGCTCATGATTCTGTTGCCAATGTAAACAATGAAGAGGATGATGGAAAAGCTATGGAAAAAGATGGATATAAGTTTGATGGATCTAGTTTGCAGACCCTCATCGAGGTGTACCGAGAAGCTTTTCTCGATGGAGATCAGAAGACTGTTTCTGAAGTCGAGGCAAGAATAAAAATGATTGGGAGGGAGAAAGATGGGTTGTCCCGGGAAGTGTCGAATATATCAACGGAGATAACGTCTGGAAAAGAGAAATATATACGCTTACAAGCTGACTTTGATAATTTTAGGAAAAGATCAGAAAAAGAACAACATACTGTGAAGAATAATGCTCAAAAGGAGGTTATTGAGAGCCTATTACCAATGATTGACCATTTTGAGAAAGCTAGACAACAAATTGTTCCTCAAACTGACAAGGAGAAGAAGATTGACATAAGTTACCAGGGTATATACAAGCAATTTGTGGAGACGTTGAGGAGCTGGCGTGTCTCGGCCGTTGCCACAGTAGGAAGACCATTTGATCCCTCATTACATGAAGCTGTAGCACGAGAGGAGTCGCAGGAGATAAAGGAAGGGATCATTATTCAAGAATTAAGACGCGGGTTTCTGCTCGGTGAACGACTTCTAAGACCAGCAAGAGTAAAAGTTTCAAAAGGTCCCGGTAGGAAGAGTTCTCGCACAATCGACGGCGAGCAACAACCTGCAGCTGCTGCTGGAGTAGATGAACACTGA 939 42.49 MAAFALSNYTLFSPCPSSPFLSSSSKTLESTTPFYQPLHLLHNPRLCNPLFTFSPTSSSSPLTRSFAPCLSAHDSVANVNNEEDDGKAMEKDGYKFDGSSLQTLIEVYREAFLDGDQKTVSEVEARIKMIGREKDGLSREVSNISTEITSGKEKYIRLQADFDNFRKRSEKEQHTVKNNAQKEVIESLLPMIDHFEKARQQIVPQTDKEKKIDISYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGRKSSRTIDGEQQPAAAAGVDEH 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5155033 5157131 + PI0024205.1 Cmetu03g1212 351356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1212 312 ProSitePatterns grpE protein signature. 242 285 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cmetu03g1212 312 PRINTS GrpE protein signature 239 254 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cmetu03g1212 312 PRINTS GrpE protein signature 156 172 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cmetu03g1212 312 PRINTS GrpE protein signature 266 285 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cmetu03g1212 312 PRINTS GrpE protein signature 184 199 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cmetu03g1212 312 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 136 229 IPR013805 -
Cmetu03g1212 312 Gene3D - 115 228 IPR013805 -
Cmetu03g1212 312 Pfam GrpE 133 287 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cmetu03g1212 312 CDD GrpE 152 285 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cmetu03g1212 312 Hamap Protein GrpE [grpE]. 80 287 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cmetu03g1212 312 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 234 289 IPR009012 GO:0006457
Cmetu03g1212 312 Gene3D Head domain of nucleotide exchange factor GrpE 232 287 IPR009012 GO:0006457
Cmetu03g1212 312 FunFam Protein GrpE 231 286 - -
Cmetu03g1212 312 MobiDBLite consensus disorder prediction 284 312 - -
Cmetu03g1212 312 PANTHER GRPE PROTEIN 65 288 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1212 K03687 - - csv:101215875 511.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1212 Cmetu-Chr3:5155033 Cmetu08g0522 Cmetu-Chr8:7147004 9.20E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g338 . . . . . . . . . . . . . Car12g00130 Sed04g0119 . Cpe07g00118 Bhi04g00711 Tan02g2357 Cmetu03g1212 . Hepe10g0529 . . Cla08g01087 Cam08g1539 Cec08g1113 Cco08g1240 Clacu08g1242 . Cre08g1023 . . . . . Csa04g01882 . Cme03g01499 . . . . . . . Bma02g00258 . . . Cma12g00139 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012843 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 0 1 2 0 1 1 1 1 1 1 0 1 1 1 1 28