Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1308 ATGTTCTTAAAAATGGTACTACAATCACAAATTCGCACAATTTTTCTCTTGCGGAGATCCTTTCGTACTTGTTACTTAACAAAACCTCTATGCACCATTACCGGATCAACTCAGGTCTCTGAATCCCCCGACCTTCCGGACTGGGTAAAGTTCTTCGATACTAAAACCTCTACACATTTAGAATCTGAGGACAATGTCTTTGTTATTCCTCCATTGGCGCACTGGCTCGAACCTCAAAAACTCGAAGACAACAATAATGTTGTTCAAAAGAAATTGGGTGAGACGAGCAATAACGAAGTTGACAAAATAAGTACGATGCTAGGGAATCGATACCCATCACCGGAAAATGTTGCAGAAGCTTTGAATGGAAAGGCTTACAGGGTTTCGAACGCTTTGGTTGCACAGCTGCTGAAGAGATTTCGGAATGATTGGATCCCAGCATATGGTATTTTCAAGTGGGCGAAAGACCAAACGTCTTATTGGCATTCACCTGAATCTTACAACTCCATGGTTGATATCTTAGGGAAGGCTAAAAAGTTTAGACTTATGTGGGAGTTAGTTGATGAGATGAATCATTTAGCTGGATATGTGAGTTTGGAGACGATGAGTAAGGTTATAAGGAGGCTTGCGAGGGCTGGTAGGCATCAGGAAGCAATTGATGCATTCCGGAGTATAGAGAAATATGGGGTTAGTACAGACACAACAGCCATGAATGTGTTGATGGATGCATTAGTCAAGGAGGGCAGTGTTGAAGATGCCCATAATGTGTTTGAAGAATTGAAGTGTTCAATACCTTTCAATTTGACCTCTTTCAATGTTCTAATACATGGGTACTGCAAAGCTAAGAAGCTAGATGAGGCGTGGAAGATTATGGGAGAAGTTGAGAAAAGTGGACTTGAACCTGATGTGATCTCCTACACTGCTTTCATTGAAGCTCATTGCCGCGAAAAGGACTTCCGGAATGTGGATAAAGTCCTGCTGCAAATGGAGAATAAGGGTTGCAAGCCTAATGTAATAACTTTCACCATTATAATGCATGCTCTAGGGAAGGCAAAACAGATAAATGAAGCTCTAGAAGTATACAAGAAGATGAAGAAAGTGGGTTGTGTGCCTGATAGTTCATTCTACAGCTCCTTGATATTCATTCTTGGTAAAGCTGGTAGGCTCACTGATGTTAAGGAGATAGTAGAGGACATGACTAAGCAGGGGGTTAATCCAGATGTGTTGATATATAACACAATGATATCTTGTGCTTGTGCGCATTCACAGGAAGAGACAGCTCTAACATTGCTACGGAAAATGGAGGAGGTTTCGTGCAAGCCAGACCTCCAGACTTACCACCCTTTGTTGAAGATGTTTTGTAAAAAGAAGAGAATGAAGGTGCTGAAGTTTTTGTTAGATCACATGTTCAAGAATGATGTAAGTATTGAAGCTGGGACTTACTCAATTCTGGTGCGGGGATTGTGCGAGAATGGGAAACTCCATCTAGCTTGCTCTTTCTTTGGGGAAATGCTGTCCAAGGGGATGGTTCCTAAAGATTCCACATTCAAGATGTTGAAGGAAGAACTTGAAAGGAAAAATATGTTAGAAGAAATGAAAATCATAGAGAAATTGATGTTCTGTGCAACAAATCAAGATACAAGTTAG 1647 40.92 MFLKMVLQSQIRTIFLLRRSFRTCYLTKPLCTITGSTQVSESPDLPDWVKFFDTKTSTHLESEDNVFVIPPLAHWLEPQKLEDNNNVVQKKLGETSNNEVDKISTMLGNRYPSPENVAEALNGKAYRVSNALVAQLLKRFRNDWIPAYGIFKWAKDQTSYWHSPESYNSMVDILGKAKKFRLMWELVDEMNHLAGYVSLETMSKVIRRLARAGRHQEAIDAFRSIEKYGVSTDTTAMNVLMDALVKEGSVEDAHNVFEELKCSIPFNLTSFNVLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLLQMENKGCKPNVITFTIIMHALGKAKQINEALEVYKKMKKVGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMTKQGVNPDVLIYNTMISCACAHSQEETALTLLRKMEEVSCKPDLQTYHPLLKMFCKKKRMKVLKFLLDHMFKNDVSIEAGTYSILVRGLCENGKLHLACSFFGEMLSKGMVPKDSTFKMLKEELERKNMLEEMKIIEKLMFCATNQDTS 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7414154 7415800 - PI0011964.1 Cmetu03g1308 351452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1308 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Cmetu03g1308 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Cmetu03g1308 548 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 267 539 - -
Cmetu03g1308 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 263 IPR002885 -
Cmetu03g1308 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Cmetu03g1308 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Cmetu03g1308 548 Pfam Pentatricopeptide repeat domain 289 350 IPR002885 -
Cmetu03g1308 548 Pfam Pentacotripeptide-repeat region of PRORP 389 520 IPR033443 -
Cmetu03g1308 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Cmetu03g1308 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Cmetu03g1308 548 NCBIfam pentatricopeptide repeat 376 408 IPR002885 -
Cmetu03g1308 548 NCBIfam pentatricopeptide repeat 410 442 IPR002885 -
Cmetu03g1308 548 NCBIfam pentatricopeptide repeat 270 303 IPR002885 -
Cmetu03g1308 548 NCBIfam pentatricopeptide repeat 166 190 IPR002885 -
Cmetu03g1308 548 NCBIfam pentatricopeptide repeat 480 511 IPR002885 -
Cmetu03g1308 548 NCBIfam pentatricopeptide repeat 339 373 IPR002885 -
Cmetu03g1308 548 NCBIfam pentatricopeptide repeat 304 338 IPR002885 -
Cmetu03g1308 548 NCBIfam pentatricopeptide repeat 238 261 IPR002885 -
Cmetu03g1308 548 Gene3D Tetratricopeptide repeat domain 329 423 IPR011990 GO:0005515
Cmetu03g1308 548 Gene3D Tetratricopeptide repeat domain 424 541 IPR011990 GO:0005515
Cmetu03g1308 548 Pfam PPR repeat 237 261 IPR002885 -
Cmetu03g1308 548 Pfam PPR repeat 166 190 IPR002885 -
Cmetu03g1308 548 Pfam PPR repeat 203 230 IPR002885 -
Cmetu03g1308 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Cmetu03g1308 548 Gene3D Tetratricopeptide repeat domain 99 262 IPR011990 GO:0005515
Cmetu03g1308 548 Gene3D Tetratricopeptide repeat domain 263 328 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1308 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0420 Cmetu-Chr1:26948779 Cmetu03g1308 Cmetu-Chr3:7414154 5.20E-14 dispersed
Cmetu03g1308 Cmetu-Chr3:7414154 Cmetu09g0635 Cmetu-Chr9:5033438 7.50E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g533 . . . . . . . . . . . Cma14g01729 . Car14g01560 Sed08g1848 . . Bhi01g00782 Tan10g0806 Cmetu03g1308 . Hepe05g1573 . . . . . . . . . . . . . . . . . . . Bda11g00588 . . . . . . . Cmo14g01768 . . . . . . . . . . . . . Cla05g00522 Cam05g0575 Cec05g0585 Cco05g0583 Clacu05g0571 Cmu05g0541 Cre05g0610 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014430 1 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 0 0 1 1 1 0 21