Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1333 ATGCCTGACCTCCGTCCCAATCCACTCACGACCCGGTTATTCCAACACCCACTTCCGATTGCCCACCAAACACCCATTAAGTTAACTCTAACAACACGCCACCCAGCCCAACCCGCTAAAGGGAGTGGTGGGAGGAGTATTGAGGAGGGGAAAGACGCGATCGGTGCCGATAGTGATAGGGATTTTGTGAACCCTGGAATCGGTTTTGAAACGGAGGTACTACCTGAGAGTAAAGACGAAGTTGGGAAGGAGAAAGAGGTGGGGATAGTTGGTGTTGGAGGTATGGATGAGTTTGATAGCGGTGGACGGAACGGTGACAAGGTTCCTGTAGCTGAAGATGAAGGCACGACTACTCCTCTTCCTGAGAAGGTTCAGGTTGGTGGTTCTCCATTGTATAAAGTTGAAAGAAAACTGGGAAAAGGAGGTTTTGGTCAGGTGTATGTGGGTCGACGAATGGGTACCATGAGTTTGAATGAAAGATCTGGCCCAGGAGCTGTGGAGGTAGCCTTAAAATTTGAGCATAGAAGTAGTAAAGGGTGCAACTATGGACCTCCTTACGAGTGGCAGGTTTACAATGCACTAGGTGGTAGTCATGGTGTGCCACGAGTTCATTACAAGGGTCGGCAAGGTGACTATTATGTCATGGTTATGGACATGCTTGGACCTAGTCTCTGGGATGTCTGGAATAACAATGCTCACACGATGTCGATTGAAATGGTAGCATGTATCGCCATTGAGGCAATCTCCATATTAGAGAAGATGCATTCTAGAGGGTACGTGCATGGTGATGTGAAGCCTGAAAATTTTCTACTCGGTCCTCCAGGAACCCCAGAAGAGAAAAAGTTGTTTCTTGTAGATCTTGGTTTAGCAACCAAGTGGCGAGATAGTTCGACTGGTCAACATGTTGAGTATGATCAACGACCAGACGTTTTCCGGGGAACAGTTCGGTATGCTAGTGTGCATGCGCATCTTGGCAGAACTGCTAGTCGGAGAGATGACTTGGAATCGCTCGCTTACACTCTTGTTTTTCTTCTCCGTGGTCGGCTGCCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTCCTTGTGTCCAAGAAAAAGATGGCTACTTCCTCTGAAACATTGTGCTGTTTTTGCCCTCAGCCTTTTAGACAGTTTGTTGAGTATGTCGTGAACTTGAAATTTGATGAAGAGCCAAACTATGCAAGATATATCTCCCTCTTTGATGGGATTGTCGGTCCGAATCCAGATATCCGTCCAATAAACACAGATGGTGCACAGAAACTTATATTTCAGGTTGGGCATAAGAGAGGAAGGCTATCCATGGAGGATGAAGATGATGAACAACCAAAGAAGAAGGTTCGGATGGGGATGCCTGCAACTCAATGGATTAGTGTTTATAATGCCCGTAGACCAATGAAACAAAGATACCACTATAACGTTGCTGATATGAGGCTCTCTCAGCATATTGAGAAGGGGAATGAAGATGGTTTATTTATTAGTTGCGTTGCTTCATGTTCAAACCTTTGGGCCCTTATTATGGATGCTGGAACTGGATTTTCCGCCCAAGTTTATGAACTCTCACCATTCTTTCTTCACAAGGAGTGGATCATGGAACAGTGGGAGAAAAACTATTACATCAGTGCAATAGCAGGGGCTAATAATGGAAGCTCATTGGTAGTAATGTCCAAAGGGACGCAGTACCTCCAGCAATCCTATAAAGTCAGTGATTCATTTCCCTTCAAGTGGATAAATAAGAAGTGGAGGGAGGGATTTTATGTTACAGCTATGGCCACTGCTGGCAGTAGATGGGCAATTGTCATGTCACGTGGTGCAGGATTTTCTGACCAGGTTGTGGAACTAGATTTCCTGTATCCCAGTGAAGGCATTCATCGCAGGTGGGATAGTGGTTACCGCATCACATCAACTGCAGCAACTTTGGACCAGGCTGCTTTTGTTCTGAGTGTGCCAAGGAGAAAGCCTGCTGATGAAACTCAAGAAACACTCCGTACATCTGCCTTTCCTAGTACACATGTCAAGGAGAAATGGGCAAAGAATCTTTATATTGCATCTATTTGCTATGGCCGAACTGTTTCATGA 2100 45.57 MPDLRPNPLTTRLFQHPLPIAHQTPIKLTLTTRHPAQPAKGSGGRSIEEGKDAIGADSDRDFVNPGIGFETEVLPESKDEVGKEKEVGIVGVGGMDEFDSGGRNGDKVPVAEDEGTTTPLPEKVQVGGSPLYKVERKLGKGGFGQVYVGRRMGTMSLNERSGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNAHTMSIEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPEEKKLFLVDLGLATKWRDSSTGQHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVSKKKMATSSETLCCFCPQPFRQFVEYVVNLKFDEEPNYARYISLFDGIVGPNPDIRPINTDGAQKLIFQVGHKRGRLSMEDEDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADMRLSQHIEKGNEDGLFISCVASCSNLWALIMDAGTGFSAQVYELSPFFLHKEWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDSGYRITSTAATLDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3372173 3376846 + PI0022911.1 Cmetu03g1333 351477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1333 699 SUPERFAMILY Protein kinase-like (PK-like) 132 414 IPR011009 -
Cmetu03g1333 699 CDD STKc_CK1 132 408 - -
Cmetu03g1333 699 FunFam casein kinase 1-like protein HD16 105 455 - -
Cmetu03g1333 699 ProSitePatterns Protein kinases ATP-binding region signature. 138 171 IPR017441 GO:0005524
Cmetu03g1333 699 Gene3D Transferase(Phosphotransferase) domain 1 110 455 - -
Cmetu03g1333 699 ProSiteProfiles Protein kinase domain profile. 132 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu03g1333 699 MobiDBLite consensus disorder prediction 92 121 - -
Cmetu03g1333 699 SMART serkin_6 132 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu03g1333 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Cmetu03g1333 699 PANTHER CASEIN KINASE-RELATED 132 665 - -
Cmetu03g1333 699 Pfam Protein kinase domain 132 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1333 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1331 Cmetu-Chr1:29148367 Cmetu03g1333 Cmetu-Chr3:3372173 8.00E-296 dispersed
Cmetu03g1333 Cmetu-Chr3:3372173 Cmetu05g0546 Cmetu-Chr5:22552412 5.10E-255 dispersed
Cmetu03g1333 Cmetu-Chr3:3372173 Cmetu06g1472 Cmetu-Chr6:3279196 1.00E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g5 . Blo12g01057 . Bda03g00159 . . . . Cmo05g00120 . . . . Car12g00229 Sed09g1609 Cpe07g00209 . Bhi04g00862 Tan02g2553 Cmetu03g1333 . Hepe10g0373 . Lcy13g1421 . . . . . . . . Cone7ag1308 . . . . . . . . . . . Bpe04g00141 . . . . . . Cma12g00246 . . . . Bhi09g02568 . . . Hepe01g2213 Mch11g0761 . Cla08g01215 Cam08g1676 Cec08g1254 Cco08g1373 Clacu08g1374 . Cre08g1159 . Csa02g02262 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000235 6 9 5 7 6 4 9 4 4 5 4 4 8 4 4 7 4 6 8 4 4 4 4 4 4 4 4 11 5 5 161
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70295 PF00069 Pkinase 3.90E-16 CL0016 Cmetu PK