Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1392 ATGTTGTCGGTTTGCTCGGCGACCCCTAGCTGTTCTTCACACTCTAAGATTACTTTCCATGGTGGCCTGAGACCCTTTCTGCCATTCCAAAAGGATTTTCTAGTTGGCAGCCATGTTACAGCAGATGGGAGCTTCACTGGCTTGCTTCGAGGAACTCAATTCCATGGAGGTTTTCCTAAAGCTTTCACCACAAGATCCTCTCTTTCTAATTTGACTATGAATGCTCAACACCCATTATCTACAGGTGGAGTGAAATATGTAGAGAATTCCAGTTTATCTGCAGGAGAAGAGACACTCCTTGATGTTTCTGGACTACGTGGTGAAATTACTTCTGTTCAAGTTTTACCTATAGAGCACGAAACTGGGCTAACCGATAAAATTGCATCAGAGAAAATGCTCTTTCTGTCCGATTCCCTAAATGTCGATAATAGTTCAGTTTCTAATTTGAAAGCAAGCACGGAGGACTTTTTGGATCGCGTCAGTGAGTCCTTTAATGCCTCTATACAACAAGGGGAAAACACTATTGAGAAATCATTGGATACAATTAACTCATTCGTATCATCTTTGATTAAACGGGGAAATCAAAGTGTAGACGATGCTTTCAGCAATATATTTTCATCTGTTGATCAGATTGGGGAACAAGGTAGTAATAAACTCACCAACTTTTCAACTGGGCTCAAAGAAGGATCATATAAAGCTTCTATTTCTGCAATCGACTTACTGAGACATGCAGTTGTTGCAATTGAGGATTCTCTGATAGATGCAACTTCATTTGTTGTCTACTCCTATGGGTCTGCCAAGGAACTCTTTCCTCCTGAGATCAGGACTGCTCTAAGTTCGTCTGAGCAAAAAGTAGCTGAAATCTTGAGTCCTGTCAAGACTGGTTTTCAACAGATTTACCCTACTGTTGAGAGTTTGGAGAAAATAGTTGGCTTAGATCCAAGTGATCCGCTCGTTCCATTTTTACTCCTCCTTGGAAGCTCTGTCACTCTGTGGATTTTCTATTGGACAAAGACATATGGTGGTTATTCTGGAGATTTATCCCCTGAAGCAACTTTCGAGCTTCTGAAAGGATCTGATAATGCTGTTCTTATTGATGTCCGGCCTGAGTATCTGAGAGAAAAAGATGGCGTTCCCGATCTTAGACGTGGAGCACGAGCTCGCTATGCAAGTGTAACTCTACCAGAGGTTGATGGCTCTATACGGAAGTTAGTCACGAGTGGAAGAGACCTCGATGACACTTTACTTGCTTCTGTCATCCGGAACCTAAAGATTGTTCAGGACAGGTCCAAGGTTATCGTCATGGATGCCAATGGTACAGGTTCTAAAAACATTGCAAGATCATTGAGAAAACTTGGGGTCAAGAAACCATACTTGATCCAAGGGGGATATCAGTCCTGGGTGAAACAGGGCCTCCGCATCAAGGAGCTCAAACCTGAAACAGCACTCAGCATACTTAACGAGGAAGCTGAGGCAATCCTGGAGGAAATAAATCCGTCTCCTGTACAAGTTCTAAGTTATGGTTTGGGTCTAGCTGCAACTTTGTACGCTTTACTAGAGTGGGAGACGTCGCTACAAATAATTGCGATCATCGGCATCGGTCAGACAATTTATCGGCGAGTTACATCTTATGAAGATGCTGAAGATTTGAACAAAGATGTCAGGCTGTTACTTACTCCAGTCAGTCTTGGAGCTCAGGCATTATCATGGGCTGCTGGGAAACTGGAAACGAACGGCATTGGATTACCAACATCTCCTTCCTCCTTGGATGTTCAAAACAGAGTGTTGCAAGCTGCTGCGAAGCACGAATCTCAGCCTTCAGTCGATGAAGGTATCCAGAACAGACCGCCCGAGGCAGCAATTCCAGTCAGTGAGGGTATAGATCTTTCTGAGGCATAG 1899 43.5 MLSVCSATPSCSSHSKITFHGGLRPFLPFQKDFLVGSHVTADGSFTGLLRGTQFHGGFPKAFTTRSSLSNLTMNAQHPLSTGGVKYVENSSLSAGEETLLDVSGLRGEITSVQVLPIEHETGLTDKIASEKMLFLSDSLNVDNSSVSNLKASTEDFLDRVSESFNASIQQGENTIEKSLDTINSFVSSLIKRGNQSVDDAFSNIFSSVDQIGEQGSNKLTNFSTGLKEGSYKASISAIDLLRHAVVAIEDSLIDATSFVVYSYGSAKELFPPEIRTALSSSEQKVAEILSPVKTGFQQIYPTVESLEKIVGLDPSDPLVPFLLLLGSSVTLWIFYWTKTYGGYSGDLSPEATFELLKGSDNAVLIDVRPEYLREKDGVPDLRRGARARYASVTLPEVDGSIRKLVTSGRDLDDTLLASVIRNLKIVQDRSKVIVMDANGTGSKNIARSLRKLGVKKPYLIQGGYQSWVKQGLRIKELKPETALSILNEEAEAILEEINPSPVQVLSYGLGLAATLYALLEWETSLQIIAIIGIGQTIYRRVTSYEDAEDLNKDVRLLLTPVSLGAQALSWAAGKLETNGIGLPTSPSSLDVQNRVLQAAAKHESQPSVDEGIQNRPPEAAIPVSEGIDLSEA 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 501653 508022 + PI0005950.1 Cmetu03g1392 351536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1392 632 CDD RHOD 352 468 - -
Cmetu03g1392 632 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 330 474 IPR036873 -
Cmetu03g1392 632 Pfam Rhodanese-like domain 359 469 IPR001763 -
Cmetu03g1392 632 Gene3D - 343 484 IPR036873 -
Cmetu03g1392 632 ProSiteProfiles Rhodanese domain profile. 358 476 IPR001763 -
Cmetu03g1392 632 SMART rhod_4 348 473 IPR001763 -
Cmetu03g1392 632 MobiDBLite consensus disorder prediction 601 632 - -
Cmetu03g1392 632 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 1 619 IPR044690 GO:0009704|GO:0071277|GO:0090333
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1392 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g389 . . . . . . . . Cmo13g01091 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00153 Csa01g00637 Chy12g01465 Cme12g01908 . . . Bda14g00903 . Bpe15g00555 . . Sed01g2262 . . Cma13g01050 . Car13g00883 . Cpe09g01146 . Bhi08g01041 Tan05g2307 Cmetu03g1392 Lac10g0201 Hepe07g2429 . . Cla04g01122 Cam04g1175 Cec01g1687 Cco01g1735 Clacu04g1203 Cmu04g1182 Cre01g1480 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006613 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 7 1 37