Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1431 ATGGCCAAGTGTCATTCCAACACCATCGGATCAGTCGTTGTCCATGGAATCTCCGGCGCCAATGCACCTACTAGACACTTCCGATTCTGTACCTCATTTTCCGGAGCTGCATTCCGCCGCAGAATCTACGACGCTGTTAGTTGCGGTGGGAGTTCTCGGTACCGCCACCGGTACAAGGATGAAATAATGGATGAAGACCCCACCATGGGGAATGGATCGGTTTCTAGGGATTTGAAGGAGCAAGAGGAGGAGAAGCCGAGGAAACAGAAAATGGGCAATGGAAAATCCGAGAAGCTCGTGGATCTTCTGAATTTGGCTGAGTCAGTGGAGCTGGAGAATGAGGCGGAGACGAGGAGGAAGGAGGAGGAATTGAAGGAGTTGAAACGCACGGTGAAGGATTTACAGGCGGAGGATTTGGGGAAGCGAAAATCGGCGGCAAGCAGTGTGAGGCTTATGGCGAAGGAGGATTTGGTAATACGAGGGACGCTTGCTCTTCTCGGTGCTATTCCTCCTCTCGTTGCGATGCTTGATTTGGAAGATGAACAATCCCAGATCGCCGCTCTCTACGCACTACTAAACCTTGGAATCGGCAACAATGCGAACAAGGCAGCAATTGTGAAAGTGGGGGTCATCCACAAAATGTTAAAGCTGATTAAATTAGAGACTACATCAAACTCATCAGTTACAGAAGCAATAATTGCAAACTTCCTCGGTTTGAGCGCACTAGACTCAAACAAGGCTGTAATTGGATCGTCTGGTGCGATTCCCTTCTTGGTCAAATCCCTTCAAAACACTCACTGTAAAATCAGCAATCAAGCTCGGCAGGATGCTTTAAGGGCGCTCTTCAATCTTTCAATTGCTTCATCAAACATCCCAATTATATTAGAAACGGATTTAATCCCATTTCTTCTTAACATGTTGGGCGACATGGAAGTAAGTGAAAGAATCCTTTCAATTTTAAGCAATGTGGTATCAACCCCAGAAGGTAGAAGAGCAATAAGCATTGTTCCAGATGCATTCCCAATATTAGTAGATGTTTTAAACTGGACAGATTCACCTGGGTGTCAAGAAAAAGGGTCTTATGTTTTGATGGTGATGGCACACAAGCTCTATGGCGAAAGACAAACAATGGTAGAAGCAGGCCTTGTATCTGCTTCTCTTGAATTAACACTTTTGGGTAGTGCATTGGCTCAGAAAAGGGCATCCAGAATTTTGGAGTGTTTGAGATATGATAAAGGGAAGCAAGTTTCTGAAAGTTTTGGTGGCAATCTTGGTGGTGCTGCTGTGTCTGCTCCCATTATTGGAACTTCATCTTCTTCAAACTGTAATATAGATTCCAAACTCTGTATGGAAGAATCTGAAGAAGCCATGAGCATGGAGAAAAAAGCAGTGAAGCAACTCGTACAACAGAGTCTACAGTACAACATGAGGAAGATTGTGAAGAGGGCCAATTTGCCTCAAGATTTTGTTCCATCAGAGCATTTTAAGTCACTTACAACAAGTTCAACTTCAAAAAGCCTACCATTTTAA 1530 44.44 MAKCHSNTIGSVVVHGISGANAPTRHFRFCTSFSGAAFRRRIYDAVSCGGSSRYRHRYKDEIMDEDPTMGNGSVSRDLKEQEEEKPRKQKMGNGKSEKLVDLLNLAESVELENEAETRRKEEELKELKRTVKDLQAEDLGKRKSAASSVRLMAKEDLVIRGTLALLGAIPPLVAMLDLEDEQSQIAALYALLNLGIGNNANKAAIVKVGVIHKMLKLIKLETTSNSSVTEAIIANFLGLSALDSNKAVIGSSGAIPFLVKSLQNTHCKISNQARQDALRALFNLSIASSNIPIILETDLIPFLLNMLGDMEVSERILSILSNVVSTPEGRRAISIVPDAFPILVDVLNWTDSPGCQEKGSYVLMVMAHKLYGERQTMVEAGLVSASLELTLLGSALAQKRASRILECLRYDKGKQVSESFGGNLGGAAVSAPIIGTSSSSNCNIDSKLCMEESEEAMSMEKKAVKQLVQQSLQYNMRKIVKRANLPQDFVPSEHFKSLTTSSTSKSLPF 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4568153 4572137 + PI0004850.3 Cmetu03g1431 351575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1431 509 Gene3D - 93 266 IPR011989 -
Cmetu03g1431 509 MobiDBLite consensus disorder prediction 76 94 - -
Cmetu03g1431 509 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 22 509 - -
Cmetu03g1431 509 Gene3D - 267 420 IPR011989 -
Cmetu03g1431 509 SUPERFAMILY ARM repeat 131 406 IPR016024 -
Cmetu03g1431 509 SMART arm_5 198 241 IPR000225 GO:0005515
Cmetu03g1431 509 SMART arm_5 242 286 IPR000225 GO:0005515
Cmetu03g1431 509 SMART arm_5 287 325 IPR000225 GO:0005515
Cmetu03g1431 509 SMART arm_5 155 196 IPR000225 GO:0005515
Cmetu03g1431 509 Coils Coil 106 137 - -
Cmetu03g1431 509 Coils Coil 450 470 - -
Cmetu03g1431 509 MobiDBLite consensus disorder prediction 61 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1431 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1431 Cmetu-Chr3:4568153 Cmetu04g1283 Cmetu-Chr4:1707787 3.60E-32 dispersed
Cmetu03g1431 Cmetu-Chr3:4568153 Cmetu07g0349 Cmetu-Chr7:24047008 4.20E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g514 . . Bda01g00768 . . . . . . . . . . . Sed11g1146 . . Bhi04g00043 Tan02g2758 Cmetu03g1431 . Hepe10g0221 . Lcy13g1826 . . . . . . . . . . . . . . . . . . Bda13g01245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00112
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001538 3 4 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 3 2 1 2 2 3 2 1 71