Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1502 ATGCCATTGTCATTGCCATTGTCATTGATGGCTCAGCAATGCACAGGATTGACATCTGAGCCTCTATCCTCAATTTCCTTCTGTCTCTCTAAGCCACTTGGTCGGAGCCGTAAGCAGAACACGGCGGCCCGTTCATTCCGCGTTTTGGCTGCAGTAATATCCAGCCCCATTCCCACTCCTCACACCACAGAGCGTTTCAAGCTCAAACAAACCTTCAATGATGCGGCTGATCGCTGCCGTAATGCTCCCATGGAAGGTGTTTCCTTCACTCTCCAGCACTTCCTTGCGTCTCTTGAGAAATACGACTTCGATCCTCAATTGGGATCCAAGGTGAAAGGTACTGTGGTCTATACAGAAGCTAATGGAGCACTTGTGGAGATTGCTGCCAAGTCACCTGCATACTTGCCGTTGCAGGAGGCTTCCATTCATAGAATAAAACGTGTAGAAGAAGCAGGAATATATCCTGGCTTTAGAGAGGAGTTTGTTATTATAGGTGAGAATGAAGATGATTGCTTGACTTTGAGCTTGAGGCCCATCCAATATGAACTTGCTTGGGAAAGGTGCAGACAGCTTCAAGCAGAGGATGCTGTTGTCAAGGGTAAGGTGGTTGGTGCGAACAAAGGGGGAGTTTTGGTAGTTGTGGAAGGCCTTAAAGGATTTGTTCCCTTCTCAGAGATATTAATGATATCAACTGGTGAAGAGCTTATCAATAAGGAGCTTCCTCTGAAATTGCTGGTGGTTGATGAGGAACAAACAAGGCTTGTCCTCAGTAACCGTAAGGTCATGGCTGACAGCAAGGCACAACTTGAAATTGGATCAGTGGTCACTGGAACAGTTCTAAGACTTGCAAAATTTGGCGCCTTTGTTGACATTGGTGGAGTCCATGGTCTTCTTCACATCAGTGAGATAAGTCATGATCGCATACTAGATATTGCAGCAGTTCTTAAGCCTGGAGACATTCTCAAGGTCATGGTATTGAACATTGATCGTGAAAAAGGCCATGTTCGTCTTTCTACCAAGAAGCTAGAGCCTAATAATGGGGACATGATTCGCAATCCTGGGCTTGTTTTCAAGAAGGCTGAGGAAATGGCACGCAGATTTAGGCAAAGATTAGCTCAAGCAGAGGCATTGGCATGTGCACGCTTGCTTAGTTTTCAGCCTGAGGGTGGATTAACTTTGAGTATTGATGGAATATTGGGTCCAGTTACCCAAAGTTGCCTGTAA 1224 45.75 MPLSLPLSLMAQQCTGLTSEPLSSISFCLSKPLGRSRKQNTAARSFRVLAAVISSPIPTPHTTERFKLKQTFNDAADRCRNAPMEGVSFTLQHFLASLEKYDFDPQLGSKVKGTVVYTEANGALVEIAAKSPAYLPLQEASIHRIKRVEEAGIYPGFREEFVIIGENEDDCLTLSLRPIQYELAWERCRQLQAEDAVVKGKVVGANKGGVLVVVEGLKGFVPFSEILMISTGEELINKELPLKLLVVDEEQTRLVLSNRKVMADSKAQLEIGSVVTGTVLRLAKFGAFVDIGGVHGLLHISEISHDRILDIAAVLKPGDILKVMVLNIDREKGHVRLSTKKLEPNNGDMIRNPGLVFKKAEEMARRFRQRLAQAEALACARLLSFQPEGGLTLSIDGILGPVTQSCL 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 23063398 23066886 + PI0028141.1 Cmetu03g1502 351646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1502 407 SUPERFAMILY Nucleic acid-binding proteins 94 202 IPR012340 -
Cmetu03g1502 407 Gene3D - 91 189 IPR012340 -
Cmetu03g1502 407 Gene3D - 190 267 IPR012340 -
Cmetu03g1502 407 SMART S1_6 270 340 IPR022967 -
Cmetu03g1502 407 SMART S1_6 193 259 IPR022967 -
Cmetu03g1502 407 SMART S1_6 106 177 IPR022967 -
Cmetu03g1502 407 SUPERFAMILY Nucleic acid-binding proteins 269 349 IPR012340 -
Cmetu03g1502 407 ProSiteProfiles S1 domain profile. 195 259 IPR003029 GO:0003676
Cmetu03g1502 407 ProSiteProfiles S1 domain profile. 272 340 IPR003029 GO:0003676
Cmetu03g1502 407 PANTHER 30S RIBOSOMAL PROTEIN S1 68 401 - -
Cmetu03g1502 407 SUPERFAMILY Nucleic acid-binding proteins 190 263 IPR012340 -
Cmetu03g1502 407 Pfam S1 RNA binding domain 269 340 IPR003029 GO:0003676
Cmetu03g1502 407 Pfam S1 RNA binding domain 193 257 IPR003029 GO:0003676
Cmetu03g1502 407 Coils Coil 357 377 - -
Cmetu03g1502 407 FunFam RNA-binding transcriptional accessory protein 257 344 - -
Cmetu03g1502 407 CDD S1_RPS1_repeat_ec2_hs2 195 259 - -
Cmetu03g1502 407 Gene3D - 268 348 IPR012340 -
Cmetu03g1502 407 FunFam 30S ribosomal protein S1 92 188 - -
Cmetu03g1502 407 ProSiteProfiles S1 domain profile. 108 177 IPR003029 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1502 K02945 - - csv:101222582 515.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1554 Cmetu-Chr1:8325925 Cmetu03g1502 Cmetu-Chr3:23063398 3.00E-06 dispersed
Cmetu03g1502 Cmetu-Chr3:23063398 Cmetu11g1188 Cmetu-Chr11:3512578 1.50E-113 dispersed
Cmetu03g1502 Cmetu-Chr3:23063398 Cmetu06g1774 Cmetu-Chr6:5606420 1.20E-142 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g25 Blo01g00046 . . Bda08g00318 . . . Bma05g01012 . Cmo17g00378 Cma06g01576 . Car06g01339 . Sed02g1123 Cpe08g00140 . Bhi01g01107 Tan10g1093 Cmetu03g1502 Lac11g1008 Hepe05g1360 . Lcy11g1322 Cla06g00406 Cam06g0428 . . Clacu06g0414 Cmu06g0414 Cre06g1194 . Cone15ag0714 Cone7ag0089 . Lsi05g01405 . . Cme06g00815 . . . . Bpe05g00810 . . . . Cmo06g01570 . . Cma17g00389 . Car17g00359 Cpe12g00340 . Bhi12g01965 Tan06g2800 . . . . Lcy12g0886 Cla05g00723 . . . . Cmu05g0745 . . Csa03g01535 Chy06g00772 .