Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1584 ATGTATAGAGTAGCGAGCGCATCGGAATACCTTGCCATTACTGGCGTCGGAATCGACGACATTAAACTCGCTAAAAAGGCATGGGTTCTTCCCGGCCAATCCTGCACCATCTTCGACATCTCTCCCGTCAACTACACCTTCGAAGTCCAAGCCATGAGCGCCGAAAAACTTCCTTTCATCCTCCCCGCCGTCTTCACCATAGGCCCTCGCTCCGACGACATCGAGTCTCTCCTTAAGTACGCCAAGCTTATTTCCCCTCACGATAAGCTCTCTAACCATGTCAAGGAGCTCGTCCAGGGCGTCATCGAGGGAGAGACTCGTGTCCTTGCAGCCTCCATGACCATGGAAGAGATTTTCAGAGGCACCAAAGAGTTTAAACAGGAAGTTTTCGGAAAGGTCCAGTTGGAGCTCGATCAATTCGGGCTTTTGATTTACAATGCTAATGTTAAACAGTTGGTGGACGTTCGTGGGCACGAGTACTTTTCGTATTTAGGGCAGAAGACGCAACAGGAAGCTGCGAATCAGGCGAAGATTGATGTGGCGGAGGCGAGGATGAAGGGGGAAATTGGGTCTAAATCCAGAGAAGGACAAACCCTTCAGAATGCTGCTAAGATCGACGCTGAGACTAAGATTATTGCGACACAGAGGCAAGGGCAGGGGAAGAAGGAGGAGATTAAAGTCAAGGCGGAGGTTAAGGTGTTCGAGAATGAGAGAGAGGCGGAAGTGGCGGAGGCTAACGCGGAACTCGCTAAGAAGAAGGCCGCCTGGACTAGAGCTGCCCAAGTGGCGGAAGTGGAAGCCGCGAAAGCCGTCGCACTCCGAGAGGCGCAGTTGCAGAAGGAAGTGGAGATGATGAATGCAATGACCATGACGGAGAAATTGAAGGCCGAATTTCTCAGCAAAGCCAGCGTTGAGTATGAAACTAAGGTACAAGAAGCAAATTGGGAGTTGTACAACAAGCAAAAGAAAGCGGAAGCTGTTCTGTTTGAGAAGGAGAGGGAAGCTGAAGCACAGAAAGCACTAGCCGACGCTGGGTTTTATGCTCGTCAACAAGTAGCCGACGGAGAGCTCTACGCCAAAAAGAAAGAAGCGGAAGGATTGGTGGCACTGGCAGAGGCTCAAGCTTTATACCTCCGTTCACTTCTCGACGCATTGGGCGGCAATTACTCCGCTCTCAGAGATTACCTAATGATAAACGGAGGTCTATTCCAAGAAGTTGCTAAAATCAATGCCGACGCCATTAAAGGGCTTCAGCCTAAGATTAGTGTCTGGACTAATGGGAGTGGCGGACAGGGTTTGGAAGGAGGAACCGGAGCTGGGAGTATAGCGATGAAAGAGGTGGCCGGAGTTTACAAAATGCTACCGCCGCTGTTTCAAACTGTTCATGAGCAAACTGGAATGCTACCTCCACCATGGATGGGAAGCTTGGGTGATTCTTCTCAGAGTTGA 1449 50.45 MYRVASASEYLAITGVGIDDIKLAKKAWVLPGQSCTIFDISPVNYTFEVQAMSAEKLPFILPAVFTIGPRSDDIESLLKYAKLISPHDKLSNHVKELVQGVIEGETRVLAASMTMEEIFRGTKEFKQEVFGKVQLELDQFGLLIYNANVKQLVDVRGHEYFSYLGQKTQQEAANQAKIDVAEARMKGEIGSKSREGQTLQNAAKIDAETKIIATQRQGQGKKEEIKVKAEVKVFENEREAEVAEANAELAKKKAAWTRAAQVAEVEAAKAVALREAQLQKEVEMMNAMTMTEKLKAEFLSKASVEYETKVQEANWELYNKQKKAEAVLFEKEREAEAQKALADAGFYARQQVADGELYAKKKEAEGLVALAEAQALYLRSLLDALGGNYSALRDYLMINGGLFQEVAKINADAIKGLQPKISVWTNGSGGQGLEGGTGAGSIAMKEVAGVYKMLPPLFQTVHEQTGMLPPPWMGSLGDSSQS 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4441741 4443599 + PI0024159.1 Cmetu03g1584 351728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1584 482 SUPERFAMILY Band 7/SPFH domain 33 172 IPR036013 -
Cmetu03g1584 482 Gene3D Band 7 domain 39 155 IPR036013 -
Cmetu03g1584 482 Pfam SPFH domain / Band 7 family 27 183 IPR001107 -
Cmetu03g1584 482 PANTHER FLOTILLIN-RELATED 1 476 IPR027705 -
Cmetu03g1584 482 Coils Coil 235 255 - -
Cmetu03g1584 482 CDD SPFH_flotillin 28 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1584 K07192 - - csv:101206203 858.596
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1584 Cmetu-Chr3:4441741 Cmetu03g1646 Cmetu-Chr3:4444926 3.30E-136 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g545 . . . . . . . . . . . . . . Sed08g1803 . . Bhi04g00024 Tan02g2740 Cmetu03g1584 . Hepe10g0237 . Lcy13g1805 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003404 0 1 0 0 0 2 1 2 2 2 2 2 1 1 2 1 2 3 1 2 2 2 1 2 1 2 2 4 2 2 47