Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1591 ATGGAATTCGACGAGGAGAACGACGAGGAAATAATGGATGAGATGCCAATCGCCGCTCACCACTACGACTCACTCACTAACTCAGCTTCAACTCGGCCAAAACCCGGTGAAGGTTCATCAACAGCGAGAAAAATCAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCCATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGTCGGGAGAAGAAGGAAGTATAGACGCACTAAAATGCGCCGCCTGTAACTGTCACCGAAATTTTCACCGGAAAGAAACAGATTCAGATCAAGGACATTACTATTACCAACAACAACAACAACAAATTTGTCCATATCGTGGGCCCACACCACACCCATCTGCTTACGTGTACTTGAGGGGGGCCCCAGTTCAACAAAGGGCGTTGGCGTTGCCGGCAGCAGCGGCAGGAAGGGAAGAGGACGACACGTCGAATCCGAGTAGCAGCGGCGGCGGTGGAAGTGGAAGTGGGCTGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTTCAGAGCAAAAGGAGAAAATGTTAGAGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGATGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTGTGGATGCATAATAATAAGCATACTTTAGGGAAGAAACCCTAA 714 48.74 MEFDEENDEEIMDEMPIAAHHYDSLTNSASTRPKPGEGSSTARKISSIRYRECLKNHAIGIGGHAVDGCGEFMPSGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYQQQQQQICPYRGPTPHPSAYVYLRGAPVQQRALALPAAAAGREEDDTSNPSSSGGGGSGSGLLLKKRFRTKFSSEQKEKMLEFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2757731 2758840 - PI0024776.1 Cmetu03g1591 351735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1591 237 MobiDBLite consensus disorder prediction 1 42 - -
Cmetu03g1591 237 Gene3D - 157 235 - -
Cmetu03g1591 237 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 50 99 IPR006456 -
Cmetu03g1591 237 MobiDBLite consensus disorder prediction 143 171 - -
Cmetu03g1591 237 MobiDBLite consensus disorder prediction 23 42 - -
Cmetu03g1591 237 FunFam Zinc-finger homeodomain protein 2 166 235 - -
Cmetu03g1591 237 Pfam ZF-HD protein dimerisation region 48 100 IPR006456 -
Cmetu03g1591 237 SUPERFAMILY Homeodomain-like 160 235 IPR009057 -
Cmetu03g1591 237 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 49 99 IPR006456 -
Cmetu03g1591 237 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 233 - -
Cmetu03g1591 237 NCBIfam homeobox domain, ZF-HD class 174 230 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1591 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1591 Cmetu-Chr3:2757731 Cmetu08g1301 Cmetu-Chr8:21673399 6.50E-45 dispersed
Cmetu10g1264 Cmetu-Chr10:4711007 Cmetu03g1591 Cmetu-Chr3:2757731 2.60E-43 transposed
Cmetu12g1743 Cmetu-Chr12:1744703 Cmetu03g1591 Cmetu-Chr3:2757731 2.20E-29 transposed
Cmetu03g1591 Cmetu-Chr3:2757731 Cmetu08g0546 Cmetu-Chr8:20960419 9.70E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g1591 . 46 237 ZF-HD Transcription Factor Family AT5G65410 54.4 1.9e-43 173.3
Cmetu08g0546 . 26 220 ZF-HD Transcription Factor Family AT4G24660 50.8 1.5e-46 183.3
Cmetu10g1264 . 76 285 ZF-HD Transcription Factor Family AT2G02540 56.5 1.2e-51 200.7
Cmetu10g1264 . 73 288 ZF-HD Transcription Factor Family AT1G14440 54.0 2.7e-54 209.5
Cmetu04g0691 . 12 269 ZF-HD Transcription Factor Family AT5G15210 54.1 1.1e-48 190.7
Cmetu09g0673 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.4 3.0e-46 182.6
Cmetu04g0691 . 22 264 ZF-HD Transcription Factor Family AT3G28920 60.7 1.3e-56 217.2
Cmetu09g0673 . 16 256 ZF-HD Transcription Factor Family AT3G28920 61.9 1.1e-55 214.2
Cmetu04g0691 . 30 262 ZF-HD Transcription Factor Family AT5G39760 63.9 1.6e-49 193.7
Cmetu09g0673 . 24 260 ZF-HD Transcription Factor Family AT5G39760 57.1 3.1e-48 189.5
Cmetu10g0522 . 5 192 ZF-HD Transcription Factor Family AT1G69600 51.9 2.5e-47 186.0
Cmetu09g0673 . 56 257 ZF-HD Transcription Factor Family AT1G69600 51.5 3.2e-47 185.7
Cmetu10g1264 . 76 285 ZF-HD Transcription Factor Family AT2G02540 56.5 1.2e-51 200.7
Cmetu08g0546 . 26 220 ZF-HD Transcription Factor Family AT4G24660 50.8 1.5e-46 183.3
Cmetu04g0691 . 30 262 ZF-HD Transcription Factor Family AT5G39760 63.9 1.6e-49 193.7
Cmetu09g0673 . 24 260 ZF-HD Transcription Factor Family AT5G39760 57.1 3.1e-48 189.5
Cmetu03g1591 . 46 237 ZF-HD Transcription Factor Family AT5G65410 54.4 1.9e-43 173.3
Cmetu10g0522 . 5 192 ZF-HD Transcription Factor Family AT1G69600 51.9 2.5e-47 186.0
Cmetu09g0673 . 56 257 ZF-HD Transcription Factor Family AT1G69600 51.5 3.2e-47 185.7
Cmetu04g0691 . 12 269 ZF-HD Transcription Factor Family AT5G15210 54.1 1.1e-48 190.7
Cmetu09g0673 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.4 3.0e-46 182.6
Cmetu10g1264 . 73 288 ZF-HD Transcription Factor Family AT1G14440 54.0 2.7e-54 209.5
Cmetu04g0691 . 22 264 ZF-HD Transcription Factor Family AT3G28920 60.7 1.3e-56 217.2
Cmetu09g0673 . 16 256 ZF-HD Transcription Factor Family AT3G28920 61.9 1.1e-55 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7608 PF04770 ZF-HD_dimer 9.00E-31 No_clan Cmetu TF