Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1602 ATGCAATCTCCCATCAAATTCATTTCCATTTTTTCTGAATTTCAATTTCTGAATTTTTTTCCTTCACATTCCCTAAATTTTACGATTATGAAATTTGGGAATTTCTTCACGGATAATTCCGATCTAAAAATAGATGACGATGGCGATTTTCCGACGCCAACCAGCGACGACTCTCCGCCGATATTTTCACCGTGGAATCAGACTTATCCCTTTCTGAAATCTCCCTGTTTTTCCGAATTACAAAACGGCGTCGTTCTTCACCAGAATAGTATTAATAATAATAATAAAAATAATAATTCTCTCATTGGGTCTCTTGTTCGTGAGGAAGGCCACGTGTACTCGCTAGCCACTGCCGGCGAGCTTCTCTATACCGGCTCCGACAGCAAAAACATTCGGGTATGGAAAAATCTCAAGGAATTTACTGGGTTTAAATCAAGCAGTGGATTGGTTAAGGCAATTATAATCTCCGGCGAAAAGATCTTCACCGATATTTTAAGAAGCTCCATGAACCCTCAAAACTACGTCGTTGTGGGACGGAACCGGAGCCGGCTTTGGTTTAAACACGCCGATGCGGTTTCGTGCTTGTGCTTGAGTGAAGATAAGACGTTATTGTATTCTTCTTCTTGGGATAAAACTTTGAAAGTTTGGAGAATTTCAGATTCTAAGTGCCTGGAATCACTTACCGTTCACGACGATGCAGTGAATGCCGTTGTTGCAACTTTAGATGGTTTGGTCATTACTGGCTCAGCCGATGGAACCGCTAAGGTATGGCGGAGACAGCATGAAGAAGAGAACGACGCAACAAAACACATACTGGACCAAACGCTGTTGAAGCAAGACAGTGCAGTGACGGCGGTGGCCGTCAACGCCGCCGGCACAGTGGTTTACTGTGGATCCTCCGACGGGTTGGTCAATTTCTGGGAGCGAGAAAAGTGCTTGACTTACGGTGGAGCCCTCAAGGGCCACAACCTAGCAGTTCTCTGCCTTGCGGCCGCCGGGAACTGCATGGTACTAAGCGGCGCCGCCGATAAAACCATATGCGTGTGGCGGAGGGATGGGCCTTTCCACACGTGCGTATCGGTGCTGACGGGTCACACAGGACCGGTTAAATGCTTGGCCGTGGAGGAAGATCGCCGCCGCCCGAATAAACAGGGAGGTCGGCGGTGGATTGCGTACAGTGGCAGCCTGGACAGATCGGTGAAGGTGTGGGGAGTTTCCGACGGGCTCGGTGGCTGA 1236 48.14 MQSPIKFISIFSEFQFLNFFPSHSLNFTIMKFGNFFTDNSDLKIDDDGDFPTPTSDDSPPIFSPWNQTYPFLKSPCFSELQNGVVLHQNSINNNNKNNNSLIGSLVREEGHVYSLATAGELLYTGSDSKNIRVWKNLKEFTGFKSSSGLVKAIIISGEKIFTDILRSSMNPQNYVVVGRNRSRLWFKHADAVSCLCLSEDKTLLYSSSWDKTLKVWRISDSKCLESLTVHDDAVNAVVATLDGLVITGSADGTAKVWRRQHEEENDATKHILDQTLLKQDSAVTAVAVNAAGTVVYCGSSDGLVNFWEREKCLTYGGALKGHNLAVLCLAAAGNCMVLSGAADKTICVWRRDGPFHTCVSVLTGHTGPVKCLAVEEDRRRPNKQGGRRWIAYSGSLDRSVKVWGVSDGLGG 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1624684 1626783 - PI0009511.1 Cmetu03g1602 351746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1602 411 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 56 162 IPR045182 -
Cmetu03g1602 411 Gene3D - 67 265 IPR015943 GO:0005515
Cmetu03g1602 411 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 226 IPR001680 GO:0005515
Cmetu03g1602 411 PRINTS G protein beta WD-40 repeat signature 391 405 IPR020472 -
Cmetu03g1602 411 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Cmetu03g1602 411 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Cmetu03g1602 411 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 185 222 - -
Cmetu03g1602 411 Gene3D - 266 410 IPR015943 GO:0005515
Cmetu03g1602 411 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 257 IPR001680 GO:0005515
Cmetu03g1602 411 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 308 IPR001680 GO:0005515
Cmetu03g1602 411 FunFam BnaA09g28200D protein 175 262 - -
Cmetu03g1602 411 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 349 IPR001680 GO:0005515
Cmetu03g1602 411 SMART WD40_4 179 217 IPR001680 GO:0005515
Cmetu03g1602 411 SMART WD40_4 269 308 IPR001680 GO:0005515
Cmetu03g1602 411 SMART WD40_4 312 350 IPR001680 GO:0005515
Cmetu03g1602 411 SMART WD40_4 220 258 IPR001680 GO:0005515
Cmetu03g1602 411 SMART WD40_4 355 404 IPR001680 GO:0005515
Cmetu03g1602 411 SMART WD40_4 98 135 IPR001680 GO:0005515
Cmetu03g1602 411 SUPERFAMILY WD40 repeat-like 94 407 IPR036322 GO:0005515
Cmetu03g1602 411 Pfam WD domain, G-beta repeat 319 349 IPR001680 GO:0005515
Cmetu03g1602 411 Pfam WD domain, G-beta repeat 188 216 IPR001680 GO:0005515
Cmetu03g1602 411 Pfam WD domain, G-beta repeat 357 403 IPR001680 GO:0005515
Cmetu03g1602 411 Pfam WD domain, G-beta repeat 222 257 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1602 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1602 Cmetu-Chr3:1624684 Cmetu11g0169 Cmetu-Chr11:29522133 1.00E-101 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g527 . Blo15g00718 Bda06g01024 Bda08g01318 Bpe07g00404 Bpe12g00071 . Bma12g00483 Cmo19g00652 Cmo11g01329 . . . . Sed11g0992 . . Bhi05g01171 Tan02g1913 Cmetu03g1602 . Hepe02g0551 . . Cla02g00560 Cam02g0588 Cec02g0589 Cco02g0600 Clacu02g0586 Cmu02g0584 Cre02g0914 . . . . . Csa07g00816 . . . Blo13g00559 Bda15g00021 Bda14g00532 . . . . . . . Cma11g01780 Cma19g00639 . . . . . . . . . . . . . . . . . . . . Chy01g00013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013246 2 1 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 2 1 0 27