Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1615 ATGAAGTTGTCCATCCATTGGTGTAATTGCATTAATCTGTTGGCTTTTCTTTTAGCAGTGATTATGAGGAGACGAGAGGGTATGAAAAGTGGTTTTTGGGTGTTGTTGATGATGCTCTTGTTGGTGGCGGCGATGGTTGCAGCGAAGGAGGGAGAGGAGGAGAAGGCGGCGGAGGCGGGGACAGTGAAAGTGAAGGTGGGTGTAGTTTTGGATTCGGATGTTTTTGGGAAGATGGCTTTGAGTTGCATCTCAATGGCTCTCTCAGATTTTTATGCTTCTCGGAGTTATTATAAGACAAGAGTGGTTCTCAAGCCCATGGACTCTAATGGCACCGTTGTTGATGCAGCTGCTGCAGCTCTAGAATTGATAAAGAAAGAGGAAGTACAAGCCATTTTAGGTCCAACAAGCTCGATGCAAGCCAACTTCATGATCGACATTGGAGACAAAGCACACGTTCCCATCATCTCATTTTCAGCCACACGACCTTCTCTCACTTCTCACCGCAGCTCTTTCTTCTTTCGAGTTGCCCAAGACGATTCCTCTCAAGTCAAAGCCATCGGAGCCATCGTCAAAACCTTCAAATGGCGAAACGTTGTCCCCATCTATGTCGACAACGAGTTCGGCGATGGCATCATCCCTTACCTCATCGACGCGCTCCAAGAAGTCAATGCTCACGTACCTTATCAAAGCATCATTTCCCCGGATGTAACAGACGACCATCTCACTAGCGAACTTTACAAATTAATGACAATGCAGACGCGAGTGTTTGTGGTACACATGTTACCTGACCTTGCCTCTCGTATTTTCACGAAAGCAAAACAAATCGGAATGATGAAAAAAGGGTATGTTTGGATAATAACGGATGGTGTTACAAACATGTTGGAGTCAATAAAGCCTTCAACTTTTGAGTCAATGCAAGGAGTTATTGGAATAAAAACTTACGTCCCTAGAACTGAAAAGCTTGAATCTTTTGAACGTGATTGGAGAAAGAGATTTCTTAGGTATTATCCAAAAATAGAAGACATTCCTACGCTGGATGTGTTTTCATTATGGGCCTATGATGCGGCTTGGGCCTTGGCCATTGCAGTGGAAAAAGCTGGGACCGACAACCTTAAATACAGCCCAACCAATTTTACAACTTTGAACTATTTATACAATCTTGGTGTGAATCAGAACGGCGGGAAGCTGCGTGATGCGTTTTCGAAGGTTAAATTCAAGGGTTTGGCTGGAGAATTTAGTGTGAAAAATGGGCAATTGGATTCGGAGATTTTTGAGATAGTGAATGTGATGGGAATGCTGAGGACGGAATTGGAAAGAGGGAGAAAGGGGCTGAGAACGATCATATGGGGCGGCGGCGATTCGGGGTTTCCGCCCAAAGGGTGGGAGATTCCGACGAATGAGAAGAAGCTGAGGGTGGTGGTTCCGGTAAAGGATGGATTTTGGGAGTTTGTGAGTGTGGTTCGTGATCCTGTGACCAATGAAACGAAAGTGAGTGGTTATTGTATAGATGTGTTTAAGGCTGTGATTGAAGCTTTGCCTTATGCTGTTGCTTATGAGCTTATTCCTTTCCATAAATCTGCGGCGGAGCCAGGTGGCACCTACAATGACTTGGTTGATCAAATCTATTTTGGGGAGTTCGATGCTTTGGTGGGTGACTTGACAATCCGAGCAAACAGGTCAAGATATATTGACTACACATTGCCATTTGCAGAGTCAGGGGTGTCAATGGTTGTGCCAATAATGAGCACCAAGAACACCAATGCATGGGTCTTCATAAAGCCTCTAACAGGCCATCTCTGGTCACTCACTGGCGGTTTCTTCCTTGTCATGGCACTTGTTGTTTGGATTTTGGAACATCGAATCAATGATGAGTTTCGTGGAAGTCCTTTGGATCAGGTCTTTACCAGTCTTTGGTACTCTTTCTCCACTATGGTTTTTGCCCATCGGGAGATAACATTGAACAATTGGACGAGATTTGTGATGATAGTATGGCTATTTGTGGTTTTAATAATCACACAAAGTTACACTGCTAGTTTGGCCTCATATTTGACAGTTCAAGAGTTCAAACCGGCTGTGACTGATATCAATCAACTGCAGAAAAATGGAGAGAAAATTGGGCACAAAGTTGGTTCTTTTATCCATGAGATTCTCACGTCATTGAATTTTAAAGATAACCAACTCAAAACTTACCGTACTGCAGAGGAAATGCACGATCTTTTATCCAAAGGAAGCGCCAATGGTGGAATTTCTGCTGCCATGGATGAAAACCCTTACATCAAGTTGTTTCTCGCCAAGTACTGCTCACAATATACTACCACTGAACCCACCTTTAAAGCTGATGGCTTTGGTTTTGGTTTCCCCAAAGGTTCGCCATTAGTACCCGATATTTCAAGAGCGATCTTGGAGGTGACAGAAAGCGACAGAATGAGAGAAATTGAAAACGCATGGTTCAAAAAGGTGGGAGAATGTTCGATATCGGATGCTTCGAAGTTGTCGTCGACTCGTCTGAGCATCGACAGCTTCTGGGCACTTTTTGTTATTGTGGCATGTGTGTCTGCAGTTGCTGTCATCTGTTACATCATCAAATTTCTGTGCGATGAAGGTGTGTGGCGGAGGGAAAATGGTTCGACTGGGGAAAGATTGAGGGAGTTGGGTAAAAAATTCATGGATAGAGATGCAGGAGCTCACCCACTTAGAAGAAGGGTATTCATAAATGGCGCTCCTGTTCATCCGCAACCTCTAGTTATTCGAGATAATGATCACCTTCGAGCAGATTGA 2778 44.13 MKLSIHWCNCINLLAFLLAVIMRRREGMKSGFWVLLMMLLLVAAMVAAKEGEEEKAAEAGTVKVKVGVVLDSDVFGKMALSCISMALSDFYASRSYYKTRVVLKPMDSNGTVVDAAAAALELIKKEEVQAILGPTSSMQANFMIDIGDKAHVPIISFSATRPSLTSHRSSFFFRVAQDDSSQVKAIGAIVKTFKWRNVVPIYVDNEFGDGIIPYLIDALQEVNAHVPYQSIISPDVTDDHLTSELYKLMTMQTRVFVVHMLPDLASRIFTKAKQIGMMKKGYVWIITDGVTNMLESIKPSTFESMQGVIGIKTYVPRTEKLESFERDWRKRFLRYYPKIEDIPTLDVFSLWAYDAAWALAIAVEKAGTDNLKYSPTNFTTLNYLYNLGVNQNGGKLRDAFSKVKFKGLAGEFSVKNGQLDSEIFEIVNVMGMLRTELERGRKGLRTIIWGGGDSGFPPKGWEIPTNEKKLRVVVPVKDGFWEFVSVVRDPVTNETKVSGYCIDVFKAVIEALPYAVAYELIPFHKSAAEPGGTYNDLVDQIYFGEFDALVGDLTIRANRSRYIDYTLPFAESGVSMVVPIMSTKNTNAWVFIKPLTGHLWSLTGGFFLVMALVVWILEHRINDEFRGSPLDQVFTSLWYSFSTMVFAHREITLNNWTRFVMIVWLFVVLIITQSYTASLASYLTVQEFKPAVTDINQLQKNGEKIGHKVGSFIHEILTSLNFKDNQLKTYRTAEEMHDLLSKGSANGGISAAMDENPYIKLFLAKYCSQYTTTEPTFKADGFGFGFPKGSPLVPDISRAILEVTESDRMREIENAWFKKVGECSISDASKLSSTRLSIDSFWALFVIVACVSAVAVICYIIKFLCDEGVWRRENGSTGERLRELGKKFMDRDAGAHPLRRRVFINGAPVHPQPLVIRDNDHLRAD 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4781839 4787962 + PI0029156.1 Cmetu03g1615 351759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1615 925 CDD PBP1_GABAb_receptor_plant 70 456 IPR044440 -
Cmetu03g1615 925 SUPERFAMILY Periplasmic binding protein-like II 456 818 - -
Cmetu03g1615 925 FunFam Glutamate receptor 588 718 - -
Cmetu03g1615 925 Pfam Ligand-gated ion channel 819 850 IPR001320 GO:0015276|GO:0016020
Cmetu03g1615 925 Gene3D - 589 732 - -
Cmetu03g1615 925 Gene3D - 763 824 - -
Cmetu03g1615 925 SMART GluR_14 469 819 IPR001320 GO:0015276|GO:0016020
Cmetu03g1615 925 Gene3D - 180 347 - -
Cmetu03g1615 925 FunFam Glutamate receptor 469 588 - -
Cmetu03g1615 925 SUPERFAMILY Periplasmic binding protein-like I 63 431 IPR028082 -
Cmetu03g1615 925 CDD GluR_Plant 468 817 - -
Cmetu03g1615 925 PIRSF IGluLR_plant 28 907 IPR017103 -
Cmetu03g1615 925 FunFam Glutamate receptor 2.7 725 825 - -
Cmetu03g1615 925 Gene3D - 464 588 - -
Cmetu03g1615 925 FunFam Glutamate receptor 184 342 - -
Cmetu03g1615 925 Pfam Receptor family ligand binding region 81 429 IPR001828 -
Cmetu03g1615 925 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 64 867 IPR015683 -
Cmetu03g1615 925 Pfam Bacterial extracellular solute-binding proteins, family 3 493 818 IPR001638 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1615 K05387 - - csv:101204040 1600.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0925 Cmetu-Chr3:4803933 Cmetu03g1615 Cmetu-Chr3:4781839 0.00E+00 dispersed
Cmetu03g1615 Cmetu-Chr3:4781839 Cmetu03g1830 Cmetu-Chr3:4796631 0.00E+00 dispersed
Cmetu03g1615 Cmetu-Chr3:4781839 Cmetu03g1814 Cmetu-Chr3:4789731 2.20E-104 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g633 . . . . . . . . . Cmo12g00333 . . . . Sed11g1121 . . Bhi04g00082 Tan02g2793 Cmetu03g1615 . Hepe10g0196 . Lcy13g1870 . . . . . . . . Cone7ag1636 . . . . . Cme03g01550 . . Bda01g01358 Bda13g01838 . . . Bma02g00574 . . . . Cma12g00381 . . . . . . . . . . . . . . . . . . Lsi08g01270 . . .