Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1719 ATGGCTGCAATGCTTTGGCCATCGCCATTTCTTCGAAACTCCATTCTTTGTTTCATTTTCATTCCTCTTTGTTGCTCTCAGTCCATTTCCCCTCAGAATATTGAAACTTCTTATCCTTTTCCATTGCCATTTCATATCCCACTCACCAACAATACTTCAGACAATTTATCAACCATCTCTCAGCGCCTATCGCCACCACCGCCATCACGTCCACCACCACAAGAAGCTGTGCAGCTGAAGTCGACACTAAAGCACGTGTCCAAGAAAGCCATCATTACAACGGTGGCGGTTTCAACTGCAGTGGCTACCCTCCTACTTTCTTTGTGTCTCTTCTTTTACATCCGAAGATGCATTCTTGCAGAACACAAGGAAGAACAAGATGGCAGAAGTACACAATCACGGGAAGGTCAGGCTTTGGTGAGTCAGAAAGAATTTACAAGATTCAATGGTAACTTTAGTGGGTTCATTCTTGAAGAAAATGGTCTGGATGTGATCTATTGGAAGAACCCTGAAAGGAGAAAGTCGAAGAAAAATGAAGAAGATGAAGTGGGTTTTGTAAAAGAGAGAGGAAGGAACCCAGAGAGAGTACAAGAAACTCCTTTGCTCAAGTCTTCAATAAAAATGAAGGCTCGTGATCACTCTCTCTCTAATTCACAAACATTGCCATGGCTCCCTCCACCTCCACCAGCGCCTCTGAGAAAACCCCCACCACCGCCACCACCAAAGGCAGTTGCCAATTCAGGACCATCTTCAGCAAGGAATGATCAGACTAGATTGAAGCCATTACATTGGGATAAAGTTAATACAAATGTAGATCATGCAATGGTGTGGGACAAGATTGATGGAGGTTCTTTCAGGTTTAATGGCGACCTTATGGAAGCTCTGTTTGGATATGTAGCCACAAACAAGAAATCGCCTCCAAAGCAGAGTGGCAATCATGAGCAAACAAAATCATCAGGCCCCAAAAATGGCAGGCGAGAACAAATCTCAATCCTCGATTCCAGAAGGTCGAGAAACATTGCAATAATTCTTAAATCCCTGGACATGTCTCGGCAAGAACTTCTCGATGCTCTCATGGAGGGACATGGCCTGGACTTAGACACACTCGAGAAACTTGTCAAGATCACTCCAAACCAAGAACAACAATCCCAAATCCTCGAATTTGATGGCGACCCATTAAAGCTTGCGGACGCAGAATCTTTCATTTTCCACCTTCTCAAGGCTGTTCCAACAGCCTTCACTCGTCTAAACGCCATGCTTTTCAGATCAAACTTCAAGTCAGAGCTTACTCGTCTCAAAGACTTTTCACAAACACTTTGTGTGGGTTGCGAAGAGCTAAAGAAAAAAGGGATATTTACAAAACTATTAGAAGCAACTCTCAAAGCTGGAAACCGATTGAATTCAGGAACAACAAGAGGAGATGCACAAGCTTTCAATCTCAATTCACTTTTAAAACTCTCAGATGTAAAAAGCACAGACGGAAAAACCACATTGCTTCACTTCGTTGTGGAAGAAGTAATCAAATCCGAAGGGAAAAAACGATTCTCAAACACAAATTCAAAAACACCCATATCGGAGAAGGAAAGAGAAAACGAATACACAATACTCGGATTATCAGCCATAGAATCACTCACCTCAGAGCTCACCAACGTCAAGAAAGCATCCACAATCGACTATGAAGCCTTCATTGCCGGTTGCCCCAATCTCTTAACCCAAATTTCAGAAATACGAAAGCTTCTATCAAAGGAAGGAGGTGAATATAAGCGGAATATGATGGATTTTGTCAAATCAGCAGAGGAAGAACTTGAGACAGCAAGAAGAGAACAAAAAAGGGTGATGGAGATTGTGAAGAAGACGAATGAGTACTATGAAACAGGGGATAGAGAAAATCCACTAGGAATATTTGTAATAGTGAGGGATTTTGTGTGCATGGTAAATAAGGTGTGTATTGAAATAGGTGGGAATTTAAAGGGGAAGAGTAAGATGGGAAATTTGAATGCATGTCCGCCATTGAAGAGCTCTTTGAGCTCGAGGTTTCCATGTTTGGCAGAGCATTTCATGTGTCGAAGTTTTTCAAGCGATTTTACGGATGACAGCTTCTGA 2103 42.32 MAAMLWPSPFLRNSILCFIFIPLCCSQSISPQNIETSYPFPLPFHIPLTNNTSDNLSTISQRLSPPPPSRPPPQEAVQLKSTLKHVSKKAIITTVAVSTAVATLLLSLCLFFYIRRCILAEHKEEQDGRSTQSREGQALVSQKEFTRFNGNFSGFILEENGLDVIYWKNPERRKSKKNEEDEVGFVKERGRNPERVQETPLLKSSIKMKARDHSLSNSQTLPWLPPPPPAPLRKPPPPPPPKAVANSGPSSARNDQTRLKPLHWDKVNTNVDHAMVWDKIDGGSFRFNGDLMEALFGYVATNKKSPPKQSGNHEQTKSSGPKNGRREQISILDSRRSRNIAIILKSLDMSRQELLDALMEGHGLDLDTLEKLVKITPNQEQQSQILEFDGDPLKLADAESFIFHLLKAVPTAFTRLNAMLFRSNFKSELTRLKDFSQTLCVGCEELKKKGIFTKLLEATLKAGNRLNSGTTRGDAQAFNLNSLLKLSDVKSTDGKTTLLHFVVEEVIKSEGKKRFSNTNSKTPISEKERENEYTILGLSAIESLTSELTNVKKASTIDYEAFIAGCPNLLTQISEIRKLLSKEGGEYKRNMMDFVKSAEEELETARREQKRVMEIVKKTNEYYETGDRENPLGIFVIVRDFVCMVNKVCIEIGGNLKGKSKMGNLNACPPLKSSLSSRFPCLAEHFMCRSFSSDFTDDSF 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6848372 6850559 - PI0018010.1 Cmetu03g1719 351863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1719 700 MobiDBLite consensus disorder prediction 176 196 - -
Cmetu03g1719 700 SMART it6_source 249 660 IPR015425 -
Cmetu03g1719 700 MobiDBLite consensus disorder prediction 302 330 - -
Cmetu03g1719 700 FunFam Formin-like protein 256 657 - -
Cmetu03g1719 700 Coils Coil 588 615 - -
Cmetu03g1719 700 MobiDBLite consensus disorder prediction 221 245 - -
Cmetu03g1719 700 SUPERFAMILY Formin homology 2 domain (FH2 domain) 262 652 - -
Cmetu03g1719 700 ProSiteProfiles Formin homology-2 (FH2) domain profile. 249 671 IPR015425 -
Cmetu03g1719 700 MobiDBLite consensus disorder prediction 303 325 - -
Cmetu03g1719 700 Pfam Formin Homology 2 Domain 252 645 IPR015425 -
Cmetu03g1719 700 MobiDBLite consensus disorder prediction 56 75 - -
Cmetu03g1719 700 MobiDBLite consensus disorder prediction 176 264 - -
Cmetu03g1719 700 PANTHER FORMIN-RELATED 39 662 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cmetu03g1719 700 Gene3D Formin, FH2 domain 246 654 IPR042201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1719 K28090 - - csv:101217450 1169.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1719 Cmetu-Chr3:6848372 Cmetu10g0982 Cmetu-Chr10:18915109 1.10E-121 dispersed
Cmetu03g1719 Cmetu-Chr3:6848372 Cmetu10g1209 Cmetu-Chr10:10688581 8.60E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g795 . . . . . Bpe10g00820 . Bma15g00202 Cmo04g01676 . . . . . Sed08g1729 . Cpe01g01416 Bhi07g01666 Tan04g1167 Cmetu03g1719 Lac13g0243 Hepe10g1681 . . Cla05g02507 Cam05g2691 Cec05g2724 Cco05g2759 Clacu05g2694 Cmu05g2548 Cre05g2663 . . Cone6ag0623 Cone9ag0638 Lsi04g00506 Csa05g02377 Chy10g00942 Cme10g00485 . . . . Bpe11g01744 . . . . . . Cma04g01601 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012958 0 1 0 0 0 1 0 1 1 1 1 1 3 1 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 0 28