Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1736 ATGTTTGCTGCAGAAAATGGTCTTAAGGGAGACCCCAGGCTTCAAGGCATCTCTCAAGCCATTAGAGTTGTTCCTCACTTCCCTAAGCCTGGGATAATGTTTCAAGATATTACTACGTTGTTGCTTGATCATAAGGCGTTTAAGGATACTGTCGACATTTTTGTAGATCGTTACAGGGGAATGAACATCTCTGTTGTTGCTGGTGTAGAAGCCAGAGGATTCATGTTTGGTCCTTCAATTGCTTTATCCATTGGAGCAAAGTTCGTTCCTTTACGAAAACCCAGAAAGCTTCCTGGTGAAGTAATTTCAGAAGCTTATGATTTGGAGTATGGAACTGATTGCTTAGAAATGCAAATAGATGCTGTGAAAACTGGGGAACGTGCATTGGTTATTGATGATTTGGTAGCCACTGGTGGAACCTTATCGGCAGCAATCAGGCTTCTGGAACGGATGGGTGCTGAAGTGGTTGAATGTGCTTGTGTTGTCGGATTGCGCGAAGTTAAGGGACAGCGTAGGCTGGATGGAAAGCCACTTTATATCCTTGTTGAACCACGTCAATTGGATGATTGTTTCTAA 576 43.23 MFAAENGLKGDPRLQGISQAIRVVPHFPKPGIMFQDITTLLLDHKAFKDTVDIFVDRYRGMNISVVAGVEARGFMFGPSIALSIGAKFVPLRKPRKLPGEVISEAYDLEYGTDCLEMQIDAVKTGERALVIDDLVATGGTLSAAIRLLERMGAEVVECACVVGLREVKGQRRLDGKPLYILVEPRQLDDCF 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4395659 4398399 + PI0013790.1 Cmetu03g1736 351880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1736 191 FunFam Adenine phosphoribosyltransferase 1 5 184 - -
Cmetu03g1736 191 NCBIfam adenine phosphoribosyltransferase 18 182 IPR005764 GO:0003999|GO:0005737|GO:0006168
Cmetu03g1736 191 SUPERFAMILY PRTase-like 18 176 IPR029057 -
Cmetu03g1736 191 CDD PRTases_typeI 51 183 IPR000836 -
Cmetu03g1736 191 Gene3D - 5 184 IPR029057 -
Cmetu03g1736 191 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 10 185 - -
Cmetu03g1736 191 Pfam Phosphoribosyl transferase domain 57 165 IPR000836 -
Cmetu03g1736 191 Hamap Adenine phosphoribosyltransferase [apt]. 17 184 IPR005764 GO:0003999|GO:0005737|GO:0006168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1736 K00759 - - csv:101215432 380.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0036 Cmetu-Chr3:1042423 Cmetu03g1736 Cmetu-Chr3:4395659 8.90E-72 dispersed
Cmetu03g1736 Cmetu-Chr3:4395659 Cmetu09g1236 Cmetu-Chr9:3003120 8.30E-67 dispersed
Cmetu03g1736 Cmetu-Chr3:4395659 Cmetu06g2098 Cmetu-Chr6:28332580 4.10E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g497 . . . . Bpe02g01252 . . . Cmo05g00378 Cmo12g00294 . Cma05g00376 . Car12g00327 Sed01g1380 . . Bhi04g00941 Tan02g2731 Cmetu03g1736 . Hepe10g0243 . Lcy13g1798 . . . . . . . . . Cone17ag1015 Cone20ag0355 . . . Cme03g01606 . Blo18g00019 Bda01g01004 Bda13g01256 Bpe14g00584 . Bma01g01273 . . . . . Cma12g00344 . Car05g00320 . . . . . . . . . Cla08g01342 Cam08g1804 Cec08g1383 Cco08g1511 Clacu08g1498 . Cre08g1285 Lsi08g01213 . Chy03g01111 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g1736 . 33 189 PRT Gene Family AT1G80050 78.3 4.6e-66 247.7
Cmetu06g2098 . 32 182 PRT Gene Family AT1G80050 77.5 2.5e-64 241.9
Cmetu09g1236 . 30 189 PRT Gene Family AT1G80050 68.1 7.8e-58 220.3
Cmetu03g0036 . 105 254 PRT Gene Family AT1G80050 70.7 9.5e-56 213.4
Cmetu03g1736 . 1 148 PRT Gene Family AT5G11160 79.7 8.4e-63 236.9
Cmetu09g1236 . 8 145 PRT Gene Family AT5G11160 76.1 1.7e-55 212.6
Cmetu06g2098 . 10 147 PRT Gene Family AT5G11160 74.6 1.1e-54 209.9
Cmetu03g0036 . 81 220 PRT Gene Family AT5G11160 72.9 1.1e-54 209.9
Cmetu03g0036 . 76 256 PRT Gene Family AT1G27450 82.9 2.6e-81 298.5
Cmetu06g2098 . 6 182 PRT Gene Family AT1G27450 75.7 8.9e-74 273.5
Cmetu09g1236 . 7 165 PRT Gene Family AT1G27450 76.1 1.2e-67 253.1
Cmetu03g1736 . 11 183 PRT Gene Family AT1G27450 68.8 4.0e-66 248.1
Cmetu11g1361 . 68 558 PRT Gene Family AT2G16570 84.4 4.4e-241 830.9
Cmetu11g1361 . 73 558 PRT Gene Family AT4G34740 85.4 1.2e-241 832.8
Cmetu11g1361 . 30 531 PRT Gene Family AT4G38880 70.9 8.8e-199 690.3
Cmetu03g0036 . 76 256 PRT Gene Family AT1G27450 82.9 2.6e-81 298.5
Cmetu06g2098 . 6 182 PRT Gene Family AT1G27450 75.7 8.9e-74 273.5
Cmetu09g1236 . 7 165 PRT Gene Family AT1G27450 76.1 1.2e-67 253.1
Cmetu03g1736 . 11 183 PRT Gene Family AT1G27450 68.8 4.0e-66 248.1
Cmetu03g1736 . 33 189 PRT Gene Family AT1G80050 78.3 4.6e-66 247.7
Cmetu06g2098 . 32 182 PRT Gene Family AT1G80050 77.5 2.5e-64 241.9
Cmetu09g1236 . 30 189 PRT Gene Family AT1G80050 68.1 7.8e-58 220.3
Cmetu03g0036 . 105 254 PRT Gene Family AT1G80050 70.7 9.5e-56 213.4
Cmetu06g2098 . 6 99 PRT Gene Family AT4G22570 88.3 1.9e-44 175.3
Cmetu09g1236 . 6 104 PRT Gene Family AT4G22570 81.8 7.2e-44 173.3
Cmetu03g0036 . 80 172 PRT Gene Family AT4G22570 80.6 1.8e-39 158.7
Cmetu03g1736 . 11 100 PRT Gene Family AT4G22570 77.8 5.0e-37 150.6
Cmetu06g2098 . 7 98 PRT Gene Family AT4G12440 88.0 2.3e-41 164.9
Cmetu09g1236 . 1 96 PRT Gene Family AT4G12440 83.3 1.2e-40 162.5
Cmetu03g0036 . 76 171 PRT Gene Family AT4G12440 79.2 5.4e-38 153.7
Cmetu03g1736 . 1 148 PRT Gene Family AT5G11160 79.7 8.4e-63 236.9
Cmetu09g1236 . 8 145 PRT Gene Family AT5G11160 76.1 1.7e-55 212.6
Cmetu06g2098 . 10 147 PRT Gene Family AT5G11160 74.6 1.1e-54 209.9
Cmetu03g0036 . 81 220 PRT Gene Family AT5G11160 72.9 1.1e-54 209.9
Cmetu03g0725 . 1 186 PRT Gene Family AT1G71750 64.0 4.6e-68 254.6
Cmetu01g0408 . 16 468 PRT Gene Family AT1G55810 85.4 2.7e-225 778.1
Cmetu06g0579 . 19 482 PRT Gene Family AT1G55810 73.3 3.3e-199 691.4
Cmetu01g0408 . 65 467 PRT Gene Family AT3G27440 77.2 1.7e-184 642.5
Cmetu06g0579 . 80 482 PRT Gene Family AT3G27440 75.4 9.4e-180 626.7
Cmetu06g0579 . 1 482 PRT Gene Family AT3G27190 86.3 2.7e-247 851.3
Cmetu01g0408 . 3 467 PRT Gene Family AT3G27190 74.2 1.6e-207 719.2
Cmetu08g1944 . 3 273 PRT Gene Family AT3G53900 57.2 7.1e-81 297.7
Cmetu01g0408 . 1 468 PRT Gene Family AT4G26510 84.5 5.3e-232 800.4
Cmetu06g0579 . 11 482 PRT Gene Family AT4G26510 75.2 2.2e-209 725.3
Cmetu06g0579 . 1 482 PRT Gene Family AT5G40870 86.5 3.6e-247 850.9
Cmetu01g0408 . 3 470 PRT Gene Family AT5G40870 73.4 2.8e-207 718.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139