Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1755 ATGGTTCATCCTGGTTCGACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGCTGCAATAAGTTACATATTAGTGTCAAGGGAAAGACTCGTCTACATCTGGTTACTATCGTTCCTACAGCACATGGTCTGAGGCTCAATCCTGGGAGTCTTCAGCTCTTACGGAGTGTAAGTCGCCCAATGTATCCTGTATCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAATCAGGTGGCGGAGCTGGGACTGCTGTTCTAAAGTCTGCAGCTGTGGTTTTGACGAGCTCTTGTGATGCCTTACGTAGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTATTGGACCTCTTATGCGCTTGGGGAGAATTCTATTTCTTCATGAGGCAGATGGAAATTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAACCTCTACTGCTATGGACTGGAGCTACGCTGATCTGCAGGGCATTGGATCCAGTAATTTTACCGTCGGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCTTTGTCTACTGTTCTGGCATTTGCCTATTGTCTATCAAGCTTGATTCAACAAGTACAGAAGTTTGCTTCTGAATCAAATGACCCAAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTATTTACACTGCAGTCTGGATTGCTGCCCTTTCACTGTTCATGGAATTGCTCGGCTTTTCTACTCAGAAGTGGCTCACTGCCGGAGGTCTCGGGACTGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACTAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCGTTTGTGGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTTTCAGGAACGGTTGAGCACGTCGGTTGGTGGTCGCCAACCATCATCCGAGGCGATGATCGTGAAGCGGTCCATATTCCAAATCACAAATTCACTGTCAGTATTGTGAGGAATCTTACCCAGAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATAATTTTTTGGATAACGTCAATCCTGAAAACCAGGCTCTTATGATCATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAGGCAATTCTCTTGGATCTTCTCAGAGTTATCAGCCATCATAGGGCCCGGCTCGCCACTCCTATTCGCACTGTTCAGAAAATATACGGCGAGGCTGATTTGGAGAATGTACCATTTTCTGAGACCATGTATTCTCGTTCAGGGGCTACTAACCGTCATCTGCTTCTGATTGAGCCATCTTATAAAGTCAATGGTGATGACAAAACCAAAGTCTCTAGTCGTCCCACTCGTTCATCAACTGAAGAAAAGGAAGCCAAACAAGAGGCAGTCTCGACGTCAGGGACAAAAGCCCCCGACACAACTGGATCAACAACAAATCTTGATATGAAAGCAGATGATAAAAAATCAATTTCTCCATCTGGTACTACACCTAAGCCTTCAGCCTCCAATCTATCCACCAGCAGTCCAGAACAAAGTAGCACGGAAAAGCCAGTAACAAGCAATGAGATAAAAGGAGAAAAGAAAGATCTCTTGGGGCTGAATTCCAAAGACAATATGCCACGAGGAACTCCGCCCAAAAGATCGCCTTCAGCTTCCAGTCCTGGGAGCGAGAAAGCTGATATTCCTTCCACAAGCTCGCAGAATAAGCAAGATGGGGAGAAGACGTCTGCATCACCATCAGTGGTAAGGCCACCTTTGGAGGAGAATATTGTGCTGGGAGTTGCCTTGGAAGGCTCCAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAATTTCCACACAGAGGAATGGGAGTGAGTTTCCTCCCAACAGTAAGGATTTGAAAGATGGCCAAATGCCTGCCGTTCCAGGTGCGACGAAAAATGATTGA 2040 44.12 MVHPGSTQFSHKLGIQSVHGCNKLHISVKGKTRLHLVTIVPTAHGLRLNPGSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAVVLTSSCDALRSSPLLLKLIPAACVIAFAAWGIGPLMRLGRILFLHEADGNWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVILPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQKFASESNDPSDARNMGFDFAGKAIYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINNFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRSGATNRHLLLIEPSYKVNGDDKTKVSSRPTRSSTEEKEAKQEAVSTSGTKAPDTTGSTTNLDMKADDKKSISPSGTTPKPSASNLSTSSPEQSSTEKPVTSNEIKGEKKDLLGLNSKDNMPRGTPPKRSPSASSPGSEKADIPSTSSQNKQDGEKTSASPSVVRPPLEENIVLGVALEGSKRTLPIDEDLDSKEISTQRNGSEFPPNSKDLKDGQMPAVPGATKND 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2964478 2969866 + PI0017441.1 Cmetu03g1755 351899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1755 679 MobiDBLite consensus disorder prediction 472 496 - -
Cmetu03g1755 679 MobiDBLite consensus disorder prediction 497 514 - -
Cmetu03g1755 679 MobiDBLite consensus disorder prediction 554 568 - -
Cmetu03g1755 679 Gene3D - 194 296 - -
Cmetu03g1755 679 Pfam Mechanosensitive ion channel 239 381 IPR006685 GO:0016020|GO:0055085
Cmetu03g1755 679 MobiDBLite consensus disorder prediction 523 553 - -
Cmetu03g1755 679 Gene3D - 298 353 IPR023408 -
Cmetu03g1755 679 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 375 IPR045042 -
Cmetu03g1755 679 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Cmetu03g1755 679 MobiDBLite consensus disorder prediction 579 611 - -
Cmetu03g1755 679 MobiDBLite consensus disorder prediction 472 679 - -
Cmetu03g1755 679 MobiDBLite consensus disorder prediction 635 649 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1755 K22047 - - csv:101213477 1263.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1755 Cmetu-Chr3:2964478 Cmetu06g1028 Cmetu-Chr6:22851900 7.30E-182 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0130 . 129 519 Mechanosensitive Ion Channel Family AT4G00290 66.2 7.5e-152 534.3
Cmetu06g1028 . 62 729 Mechanosensitive Ion Channel Family AT5G10490 58.2 2.0e-192 669.5
Cmetu03g1755 . 10 668 Mechanosensitive Ion Channel Family AT5G10490 54.4 2.6e-179 625.9
Cmetu03g1755 . 10 648 Mechanosensitive Ion Channel Family AT1G58200 53.4 3.6e-181 632.1
Cmetu06g1028 . 34 700 Mechanosensitive Ion Channel Family AT1G58200 52.8 1.5e-174 610.1
Cmetu11g1342 . 43 883 Mechanosensitive Ion Channel Family AT1G53470 56.1 1.8e-249 859.4
Cmetu01g0333 . 92 953 Mechanosensitive Ion Channel Family AT1G53470 51.0 1.0e-239 827.0
Cmetu11g1342 . 43 884 Mechanosensitive Ion Channel Family AT3G14810 53.1 5.8e-237 817.8
Cmetu01g0333 . 60 953 Mechanosensitive Ion Channel Family AT1G78610 55.4 5.1e-273 937.6
Cmetu11g1342 . 43 883 Mechanosensitive Ion Channel Family AT1G78610 59.3 9.9e-269 923.3
Cmetu11g1342 . 217 891 Mechanosensitive Ion Channel Family AT2G17000 61.0 5.1e-225 778.1
Cmetu01g0333 . 267 941 Mechanosensitive Ion Channel Family AT2G17000 58.7 2.4e-222 769.2
Cmetu11g1342 . 1 668 Mechanosensitive Ion Channel Family AT2G17010 50.2 6.1e-165 578.2
Cmetu02g0585 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.4 9.0e-194 674.1
Cmetu07g1894 . 72 703 Mechanosensitive Ion Channel Family AT5G12080 52.3 4.1e-178 622.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71