Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1805 ATGGCTTCTTCTATCCTCCCTCTTGCTTCCGCCACCCCTTCTTCTGCTTCACGTTCCTCACTTGAGAACAATAAGAAGAAGTTGAACCTTGGAAGTAGCTCTCTAAGCTTTGATCGTGACAAAAACCATCCATTCGCGAAGGCGAAGTCCTTCAGCAGGATATCTATGGTTGCTTCGGTTAATGTCTCTCGGTTTGAGGGGATTACGATGGCTCCTCCCGATCCAATTCTTGGAGTTTCTGAGGCTTTCAAAGCAGATACACACGGAAACAAACTCAACTTGGGAGTTGGTGCATACCGCACGGAAGAGCTGCAACCTTATGTGCTTGATGTTGTGAAGAAGGTTGAGGCACTTATGCTGGAGAGGGGAGATAACAAAGAGTATCTCCCAATTGAAGGTCTGGCAGCATTTAATAAGGCAACTGCAGAGTTATTATTTGGAGCCGATAACCCTGTCATTAAGCAGCAACGTGTTGCGACTATTCAAGGTCTGTCAGGGACTGGTTCTCTCAGACTAGCTGCCGCGCTTATAGAACGATACTTTCCTGGTGCAAAAGTCCTTATATCTTCTCCAACTTGGGGGAATCATAAAAATATTTTCAATGATGCAAGGGTTCCATGGTCTGAGTATCGATATTATGACCCTAAAACAGTTGGTTTGGATTTTGAGGGGATGATATCTGATATTAAGGCAGCACCTGAAGGATCTTTTGTGCTGCTTCATGGTTGTGCTCACAACCCAACTGGCATTGACCCAACACCTGAGCAGTGGGAAAAAATTGCTGATGTCATTCAGGAAAAGAACCACATTCCATTTTTCGATGTTGCATATCAGGGCTTTGCTAGTGGAAGCCTTGATGCTGATGCAGCATCTGTTAGGCTGTTTGCAGCTCGTGGTTTGGAGCTTTTGGTTGCTCAATCCTATAGTAAAAATCTTGGTCTTTATGCTGAAAGGATTGGGGCTATCAATGTCGTCTGCACATCAGCAGATGCAGCAACCAGGGTAAAGAGCCAGTTGAAGAGGCTTGCTCGACCAATGTACTCAAATCCTCCAGTTCATGGGGCTAGAATTGTTGCGAACATTGTTGGAGATCCAGCACTATTTAACGAGTGGAAAGCAGAAATGGAAATGATGGCTGGAAGAATAAAGAATGTTAGACAGAAGCTCTATGATAGTCTCTGTGCAAAAGATAAAAGTGGGAAAGATTGGGCCTTTATACTCAAGCAGATTGGCATGTTCTCATTCACAGGCTTGAGCAAAGTTCAGAGTGATAATATGACGGACAAATGGCATGTATACATGACAAAGGATGGAAGGATATCTTTGGCTGGATTGTCGTTAGCTAAATGTGAATATCTCGCAGATGCCATCATTGATTCATTCCACAATGTACGGTAA 1398 43.92 MASSILPLASATPSSASRSSLENNKKKLNLGSSSLSFDRDKNHPFAKAKSFSRISMVASVNVSRFEGITMAPPDPILGVSEAFKADTHGNKLNLGVGAYRTEELQPYVLDVVKKVEALMLERGDNKEYLPIEGLAAFNKATAELLFGADNPVIKQQRVATIQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMISDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADAASVRLFAARGLELLVAQSYSKNLGLYAERIGAINVVCTSADAATRVKSQLKRLARPMYSNPPVHGARIVANIVGDPALFNEWKAEMEMMAGRIKNVRQKLYDSLCAKDKSGKDWAFILKQIGMFSFTGLSKVQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHNVR 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4493122 4497005 - PI0015107.3 Cmetu03g1805 351949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1805 465 FunFam Aspartate aminotransferase 123 364 - -
Cmetu03g1805 465 Gene3D - 123 364 IPR015421 GO:0003824
Cmetu03g1805 465 PRINTS Aspartate aminotransferase signature 406 424 IPR000796 GO:0006520|GO:0008483
Cmetu03g1805 465 PRINTS Aspartate aminotransferase signature 337 362 IPR000796 GO:0006520|GO:0008483
Cmetu03g1805 465 PRINTS Aspartate aminotransferase signature 269 281 IPR000796 GO:0006520|GO:0008483
Cmetu03g1805 465 PRINTS Aspartate aminotransferase signature 238 257 IPR000796 GO:0006520|GO:0008483
Cmetu03g1805 465 FunFam Aspartate aminotransferase 350 457 - -
Cmetu03g1805 465 PANTHER ASPARTATE AMINOTRANSFERASE 59 463 IPR000796 GO:0006520|GO:0008483
Cmetu03g1805 465 SUPERFAMILY PLP-dependent transferases 63 459 IPR015424 -
Cmetu03g1805 465 Gene3D Aspartate Aminotransferase, domain 1 68 457 IPR015422 GO:0003824
Cmetu03g1805 465 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 307 320 IPR004838 GO:0003824|GO:0009058|GO:0030170
Cmetu03g1805 465 MobiDBLite consensus disorder prediction 1 25 - -
Cmetu03g1805 465 Pfam Aminotransferase class I and II 90 457 IPR004839 GO:0009058|GO:0030170
Cmetu03g1805 465 CDD AAT_like 92 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1805 K00811 - - csv:101213342 877.856
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1805 Cmetu-Chr3:4493122 Cmetu04g1897 Cmetu-Chr4:31065465 9.20E-128 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g534 . . . Bda03g00085 . . . . . . . . . . Sed11g1156 . . Bhi04g00034 Tan02g2749 Cmetu03g1805 . . . Lcy13g1814 . . . . . . . . Cone7ag1676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01356 Cam08g1821 Cec08g1400 Cco08g1530 Clacu08g1516 . Cre08g1302 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006495 1 2 1 0 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 2 1 37