Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1857 ATGGGATTTCTTCAAACCCATTTTGTTTCTTCTTCCTCTGTTTTGTTTCACTCTCTGTTTTTGGTCATCTTCTTTAAAGGTGTTTCCGGAGCTGGATTTACATTTGTAAATCGATGCGATTTCACTGTTTGGCCGGGAATTCTTGGCAACCCCCAATTGGAATCCACTGGATTCGAGCTCTCTCCGGGAGCGGCGCGTTCATTTCAAGCGCCGCCGGGTTGGTCCGGCAGGTTCTGGGGTCGGACCGGCTGTTCGTTTGACCCGGCCACTGGTCAGGGCAATTGTCAAACGGCTGATTGTGGATCAAACCAAATAGAATGCAATGGCGCCGGAGCTACTCCGCCGGCGACTCTAGCCGAGTTTACGATCGGCGGAGGTGCAGGTGGGCAGGACTTTTACGATGTCAGTTTGGTCGACGGTTACAACATTCCGATGGTGGTCGATGCCACTGGTGGGAGCGGCGTGTGTCAGTCGACTGGGTGCGCGGCGGAGCTGAACCGGCGGTGCCCAGCGGAGCTACGTGCTGGCGAAGGGAAGGCGTGTAGGAGCGCGTGTGAGGCGTTTGGGAACCCGGAATACTGCTGCAGAGGCGCGTATAACTCACCTGCCGCTTGTAAGCCGTCGATTTACTCGGAAATGTTCAAATCGGCTTGCCCTAAATCGTATAGCTATGCGTTTGATGACGCAACAAGCACTTTTACTTGTAGTGGAGCAGATTACACCATTACATTCTGCCCCTCATCGGCAAGTTTGAATATGAAAGATATGGTTAGTGGAAGGTGGTGGCTGGCGGTGGCGGTGACGGTGGTTGGTGGCGGTGGTGGAGAACCTGCTGTAAAGAACCAACTTTGCTGGACTACGAAGATTGGTAATTTTTAA 879 52.9 MGFLQTHFVSSSSVLFHSLFLVIFFKGVSGAGFTFVNRCDFTVWPGILGNPQLESTGFELSPGAARSFQAPPGWSGRFWGRTGCSFDPATGQGNCQTADCGSNQIECNGAGATPPATLAEFTIGGGAGGQDFYDVSLVDGYNIPMVVDATGGSGVCQSTGCAAELNRRCPAELRAGEGKACRSACEAFGNPEYCCRGAYNSPAACKPSIYSEMFKSACPKSYSYAFDDATSTFTCSGADYTITFCPSSASLNMKDMVSGRWWLAVAVTVVGGGGGEPAVKNQLCWTTKIGNF 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2430874 2433141 + PI0021535.1 Cmetu03g1857 352001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1857 292 SMART tha2 33 246 IPR001938 -
Cmetu03g1857 292 FunFam THAUMATIN-LIKE PROTEIN 1 31 246 - -
Cmetu03g1857 292 CDD TLP-PA 33 245 - -
Cmetu03g1857 292 SUPERFAMILY Osmotin, thaumatin-like protein 33 247 IPR037176 -
Cmetu03g1857 292 Gene3D Thaumatin 31 246 IPR037176 -
Cmetu03g1857 292 ProSiteProfiles Thaumatin family profile. 30 246 IPR001938 -
Cmetu03g1857 292 Pfam Thaumatin family 37 246 IPR001938 -
Cmetu03g1857 292 PANTHER OS03G0233200 PROTEIN 16 246 IPR001938 -
Cmetu03g1857 292 PIRSF PR5 3 267 IPR001938 -
Cmetu03g1857 292 PRINTS Pathogenesis-related protein signature 56 65 IPR001938 -
Cmetu03g1857 292 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Cmetu03g1857 292 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Cmetu03g1857 292 PRINTS Pathogenesis-related protein signature 131 147 IPR001938 -
Cmetu03g1857 292 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1857 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1857 Cmetu-Chr3:2430874 Cmetu06g1560 Cmetu-Chr6:30406144 1.80E-97 dispersed
Cmetu03g1137 Cmetu-Chr3:2419496 Cmetu03g1857 Cmetu-Chr3:2430874 4.20E-70 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1122 . . . . Bpe15g00474 . . . . . . Cma07g00422 Car03g00627 . Sed11g1095 Cpe19g00864 . Bhi03g00860 Tan03g2090 Cmetu03g1857 . Hepe04g1597 . . Cla01g01986 Cam01g2080 Cec04g1739 Cco04g1805 Clacu01g2102 Cmu01g1977 Cre04g1653 Cone8ag0854 . . Cone9ag1609 Lsi01g00594 . . Cme08g00938 . . Bda11g01832 . Bpe10g00159 Bpe06g00130 . . Sed05g3597 . Cmo07g00418 . Cma20g00763 . . . . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . . . . . . . . Lsi07g01099 Csa06g03334 Chy02g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116