Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1896 ATGGCTACTTGGTGGGGTAGAGAAAGTCACAAGGGAACCCCTGTTGTTGTGAAGATGGAAAATCCCAACTGGTCAATAGTTGAAGTTGAAAGTCCTTCCGATGATGACTTCATCATCGGCGCCGAGTCGCCACCGGGTCGAGCCCGAGACAAGGGACGAGGCAAAAATGCCAAACAGCTCACTTGGGTTCTTCTTCTTAAAGCCCACAAAGCCGCCGGTTGTTTAACCTCCATTGGCTCTGCATTGGTTAACATCGTCACCGTCGTTAAACGCCGTCTTGCTTCTGGAAGAACTGACGCCGACGCCGACGCCGACGCCGATGCCGACAATGACAACGCTGACGACGGCGTGAGGGAGAACCCAACTGTTAAAACCAGGTTCTATTTGTTTATTAAGGTTTTCCTTTGGCTGTCGGTGCTTCTGTTAGGGTTTGAGTTGGCGGCTTATTATAAAGGTTGGCATTTTGAGGCACCCCATCTTCAATTGGACTACTTGTGGACAACCCCATTTGGGGTTAAGGATGTTTTTGACTGGTTTTATTTCAAATGGGTTTTGATTCGGGTTGCATATTTTGCTCCTCCTCTACAGTTTTTAGCCAATGTTTGTATTGTGTTGTTCCTCATTCAAACTTTGGATAGGCTTATTCTTTGTTTGGGTTGTTTCTGGATTCGATTCAAGAAAATCAAACCTGTTCCTAAGGTTGCTGCTATGGATCTTGAGTCTGGAGAAACTGGCTACTTCCCTATGGTTCTTGTTCAGATCCCAATGTGCAATGAGAAAGAGGTTTATCAGCAATCAATTGCTGCTGTCTGCAACTTGGACTGGCCAAAAGACAAGTTACTGATTCAGGTTCTTGATGACTCGGATGATCCAATCACCCAATTGCTGATCAAAGAGGAGGTACATAAATGGCAACAACTCGATGCCAAAATTGAATACCGACATCGGGTGATCCGAGAGGGATATAAGGCTGGCAATCTCAAGTCTGCCATGAATTGTAGCTCTGTCAAAGACTATGAGTTTGTTGCTATCTTTGATGCTGATTTTCAGCCTGCTTCTGATTTCCTCAAAAGAACAGTTCCTCATTTTAAGGATAATGAGGAACTAGGACTCGTTCAAGCACGATGGTCATTCGTGAACAAAGACGAGAACTTGCTAACCAGACTACAGAATATTAACTTAGCCTTCCATTTTGAAGTAGAGCAACAAGTGAATGGTGTGTTTCTCAATTTCTTTGGATTCAATGGAACTGCTGGTGTTTGGAGGATAAAGGCTCTTGAAGAAGCCGGTGGCTGGTTGGAAAGGACCACTGTCGAGGACATGGACATTGCCGTCCGTGCTCATCTTCATGGTTGGAAATTCATATTCCTCAATGATGTAGAGTGCCAATGTGAATTACCAGAATCGTATGAAGCATATAGAAAACAACAGCATAGATGGCATTCGGGACCAATGCAACTGTTTCGACTTTGTTTGCCCGATATAGTTCGTTCAAAGATTGGCATATCAAAGAAATTCAATTTGATCTTCCTGTTCTTTCTCTTACGAAAGCTGATACTGCCATTTTATTCATTTACCCTCTTCTGCATAATTCTCCCAATGACGATGTTTGTTCCTGAAGCTGAGTTGCCGGCGTGGGTTGTATGTTACATTCCAGCTACAATGTCCTTTCTCAACATCCTTCCGGCACCAAAGTTCTTCCCCTTCATCGTTCCTTACCTTCTCTTTGAGAATACTATGTCAGTAACTAAGTTTAACGCAATGGTCTCGGGACTCTTCCAGCTAGGTAGTGCATATGAGTGGGTTGTTACAAAGAAATCAGGCCGTTCGTCCGAGGGTGATCTTTCCTCAATGGTTGAGAAGAAAACGATGAACTCTGAAAAGAGTGTCTCAACAAACAACCTTGAGGAAATTGAGTTAATCCAAAAACAGGACAAAATGTTGCCAAGGAAGAAGCATAACAGAATATACATGAAGGAGCTAGCACTAGCTTTCCTTCTTCTAACAGCCTCAGCTAGAAGCCTCCTCTCAGCTCAAGGGATTCATTTCTACTTCCTGCTGTTTCAGGGGATATCCTTCCTCCTCGTTGGTCTAGACTTGATCGGTGAGCAGGTTGTTTAA 2121 43.89 MATWWGRESHKGTPVVVKMENPNWSIVEVESPSDDDFIIGAESPPGRARDKGRGKNAKQLTWVLLLKAHKAAGCLTSIGSALVNIVTVVKRRLASGRTDADADADADADNDNADDGVRENPTVKTRFYLFIKVFLWLSVLLLGFELAAYYKGWHFEAPHLQLDYLWTTPFGVKDVFDWFYFKWVLIRVAYFAPPLQFLANVCIVLFLIQTLDRLILCLGCFWIRFKKIKPVPKVAAMDLESGETGYFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKDKLLIQVLDDSDDPITQLLIKEEVHKWQQLDAKIEYRHRVIREGYKAGNLKSAMNCSSVKDYEFVAIFDADFQPASDFLKRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEEAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIVRSKIGISKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKFFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLSSMVEKKTMNSEKSVSTNNLEEIELIQKQDKMLPRKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVV 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 816965 820905 + PI0027048.1 Cmetu03g1896 352040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1896 706 Pfam Glycosyl transferase family group 2 342 548 IPR001173 -
Cmetu03g1896 706 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 182 703 - -
Cmetu03g1896 706 FunFam probable xyloglucan glycosyltransferase 5 241 466 - -
Cmetu03g1896 706 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 241 465 IPR029044 -
Cmetu03g1896 706 SUPERFAMILY Nucleotide-diphospho-sugar transferases 250 528 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1896 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2286 Cmetu-Chr1:22051705 Cmetu03g1896 Cmetu-Chr3:816965 1.90E-241 dispersed
Cmetu03g1896 Cmetu-Chr3:816965 Cmetu04g0694 Cmetu-Chr4:30753336 2.10E-240 dispersed
Cmetu03g1896 Cmetu-Chr3:816965 Cmetu07g2267 Cmetu-Chr7:23109624 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g605 Blo01g01484 Blo12g00794 Bda01g00601 Bda03g00159 Bpe02g00467 Bpe04g00141 . Bma01g02228 . Cmo12g00551 Cma01g01758 Cma09g00311 Car01g01374 Car12g00556 Sed10g1150 Cpe06g00220 Cpe07g00533 Bhi04g00461 Tan02g1687 Cmetu03g1896 . Hepe08g1357 . Lcy13g2156 Cla08g01643 Cam08g2147 Cec08g1735 Cco08g1854 Clacu08g1835 . Cre08g1618 Cone4ag1635 Cone7ag1317 Cone17ag0903 Cone20ag0246 Lsi04g01454 Csa04g02506 . Cme03g02127 . . . . . . . . Sed11g1870 Cmo01g01821 Cmo09g00311 Cma12g00615 . . Car09g00263 . Cpe02g00240 Bhi09g03190 Tan01g4659 Cmetu07g2267 . Hepe01g1852 Mch11g0387 . . . . . . . . Lsi08g01551 Csa02g01868 Chy07g00213 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu11g2039 . 221 382 REM Transcription Factor Family AT1G49480 71.0 7.1e-57 217.6
Cmetu04g0694 . 1 684 REM Transcription Factor Family AT2G24630 75.9 2.5e-310 1061.2
Cmetu09g0739 . 6 668 REM Transcription Factor Family AT2G24630 69.0 2.4e-265 911.8
Cmetu07g2267 . 1 706 REM Transcription Factor Family AT2G24630 64.0 2.9e-263 904.8
Cmetu03g1896 . 5 704 REM Transcription Factor Family AT2G24630 65.5 7.0e-257 883.6
Cmetu01g2286 . 5 694 REM Transcription Factor Family AT2G24630 62.1 1.1e-246 849.7
Cmetu04g0694 . 1 684 REM Transcription Factor Family AT2G24630 75.9 2.5e-310 1061.2
Cmetu09g0739 . 6 668 REM Transcription Factor Family AT2G24630 69.0 2.4e-265 911.8
Cmetu07g2267 . 1 706 REM Transcription Factor Family AT2G24630 64.0 2.9e-263 904.8
Cmetu03g1896 . 5 704 REM Transcription Factor Family AT2G24630 65.5 7.0e-257 883.6
Cmetu01g2286 . 5 694 REM Transcription Factor Family AT2G24630 62.1 1.1e-246 849.7
Cmetu04g0694 . 1 684 REM Transcription Factor Family AT2G24630 75.9 2.5e-310 1061.2
Cmetu09g0739 . 6 668 REM Transcription Factor Family AT2G24630 69.0 2.4e-265 911.8
Cmetu07g2267 . 1 706 REM Transcription Factor Family AT2G24630 64.0 2.9e-263 904.8
Cmetu03g1896 . 5 704 REM Transcription Factor Family AT2G24630 65.5 7.0e-257 883.6
Cmetu01g2286 . 5 694 REM Transcription Factor Family AT2G24630 62.1 1.1e-246 849.7
Cmetu11g2039 . 221 382 REM Transcription Factor Family AT1G49480 71.0 7.1e-57 217.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002112 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 2 2 2 2 2 2 2 2 2 3 2 1 65