Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1930 ATGTCGGAAGTAATTTCCGTGATGGATATTGACGACGATAATGGCGACAACGAAGCCGAAAAGGCAGTCAAGGGAAAAAACGTTGCCAGTCCTGCCGCCGCACCCGACGGCGAAGCGATACCCTGGGTTGAGAAGTTCCGGCCTAAGTCTCTCGCTGACGTTGCTGCTCACCGTGACATTGTTGACACCATCGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTTCTGTTGTACGGCCCTCCTGGTACTGGCAAGACATCAACTATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCACAACATGATTTTGGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAAGCATCTGTAAAATTGGTACTGTTGGATGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGAAGAGTAATTGAGAAATACACAAAAAATACAAGGTTTGCTCTTATCTGCAATCACGTCAATAAGATTATTCCAGCATTACAATCAAGATGTACCCGCTTTCGATTTGCCCCCCTTGATAACTTTCATGTCACTGAACGACTCAGATACGTTATTGAGGCTGAGAGGTTGGACTTCACTGAGAGTGGCTTAGCTGCCCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCCTTAAATATCCTGCAGTCAACGCACATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTTTGCACAGGGAACCCAATGCCTAAAGACATAGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATCTGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTCGTTTTTAAGATAAAGATGCCATCGGATATCAGAGTCCAGTTGATTAACGATCTGGCTGACATAGAGTACAGGATGAGTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACACGAGCTAGATCTGCTCTCGTTGCTGCTGCACAGTAG 1092 44.41 MSEVISVMDIDDDNGDNEAEKAVKGKNVASPAAAPDGEAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDFTESGLAALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVAAAQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12328390 12341024 - PI0027924.1 Cmetu03g1930 352074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1930 363 Gene3D - 264 361 - -
Cmetu03g1930 363 Pfam Replication factor C C-terminal domain 264 350 IPR013748 -
Cmetu03g1930 363 CDD AAA 60 198 - -
Cmetu03g1930 363 Gene3D - 202 263 - -
Cmetu03g1930 363 SMART AAA_5 72 202 IPR003593 GO:0016887
Cmetu03g1930 363 Pfam ATPase family associated with various cellular activities (AAA) 76 196 IPR003959 GO:0005524|GO:0016887
Cmetu03g1930 363 FunFam Replication factor C subunit 5 201 263 - -
Cmetu03g1930 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Cmetu03g1930 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 41 346 - -
Cmetu03g1930 363 FunFam Replication factor C subunit 5 264 361 - -
Cmetu03g1930 363 Gene3D - 36 198 IPR027417 -
Cmetu03g1930 363 CDD HLD_clamp_RFC 203 261 - -
Cmetu03g1930 363 FunFam Replication factor C subunit 5 34 199 - -
Cmetu03g1930 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677|GO:0006260
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1930 K10756 - - csv:101217230 692.189
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1930 Cmetu-Chr3:12328390 Cmetu06g1240 Cmetu-Chr6:27880132 3.70E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g244 . . . . Bpe02g00056 . . . Cmo04g02487 Cmo15g00675 . . . . Sed03g0420 . . Bhi04g01892 Tan11g1257 Cmetu03g1930 . Hepe02g2711 . Lcy10g1238 Cla08g00608 Cam08g1021 Cec08g0611 Cco08g0722 Clacu08g0732 . Cre08g0540 . . Cone17ag1292 Cone20ag0436 . . . Cme03g00527 . Blo18g00180 Bda11g00726 Bda13g01478 . Bpe14g00388 Bma01g00807 Bma02g00213 . . . . . Car04g02301 Car15g00613 Cpe01g02062 . . . . . . . . . . . . . . . Lsi08g00447 . Chy03g00359 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1973 . 106 796 Core DNA Replication Machinery Family AT4G14700 66.8 7.2e-269 923.7
Cmetu09g1273 . 105 608 Core DNA Replication Machinery Family AT4G14700 59.5 4.8e-172 602.1
Cmetu02g0756 . 91 494 Core DNA Replication Machinery Family AT4G14700 68.4 4.1e-163 572.4
Cmetu09g1323 . 106 266 Core DNA Replication Machinery Family AT4G14700 65.9 2.1e-58 224.6
Cmetu09g0384 . 6 137 Core DNA Replication Machinery Family AT4G14700 73.7 1.9e-51 201.4
Cmetu09g1973 . 72 796 Core DNA Replication Machinery Family AT4G12620 67.1 1.0e-278 956.4
Cmetu09g1273 . 71 608 Core DNA Replication Machinery Family AT4G12620 60.0 4.8e-180 628.6
Cmetu02g0756 . 89 494 Core DNA Replication Machinery Family AT4G12620 68.7 1.1e-163 574.3
Cmetu09g1323 . 72 266 Core DNA Replication Machinery Family AT4G12620 61.8 1.5e-64 245.0
Cmetu09g0384 . 6 137 Core DNA Replication Machinery Family AT4G12620 73.7 7.2e-51 199.5
Cmetu03g0945 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.5 2.7e-140 495.4
Cmetu10g0487 . 2 351 Core DNA Replication Machinery Family AT2G01120 65.0 1.6e-131 466.5
Cmetu11g0818 . 3 536 Core DNA Replication Machinery Family AT4G29910 59.7 4.8e-179 624.8
Cmetu05g1262 . 1 283 Core DNA Replication Machinery Family AT1G26840 64.0 3.8e-92 335.1
Cmetu01g1941 . 4 800 Core DNA Replication Machinery Family AT1G79150 59.6 1.1e-245 846.7
Cmetu04g0809 . 1 952 Core DNA Replication Machinery Family AT1G44900 72.9 0.0e+00 1307.4
Cmetu04g1329 . 1 554 Core DNA Replication Machinery Family AT5G46280 77.1 3.1e-250 861.3
Cmetu01g1320 . 1 844 Core DNA Replication Machinery Family AT2G16440 76.1 0.0e+00 1151.0
Cmetu05g1624 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1113.6
Cmetu04g3110 . 68 896 Core DNA Replication Machinery Family AT5G44635 72.6 0.0e+00 1192.6
Cmetu01g2697 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.0 0.0e+00 1217.6
Cmetu11g1143 . 12 504 Core DNA Replication Machinery Family AT2G29680 59.4 5.7e-163 571.2
Cmetu11g1143 . 22 465 Core DNA Replication Machinery Family AT1G07270 58.2 8.2e-140 494.2
Cmetu01g0268 . 1 592 Core DNA Replication Machinery Family AT3G25100 76.5 3.2e-258 887.9
Cmetu04g2866 . 12 770 Core DNA Replication Machinery Family AT3G09660 72.7 4.0e-314 1073.5
Cmetu01g0077 . 10 645 Core DNA Replication Machinery Family AT2G14050 77.7 6.5e-289 989.9
Cmetu11g2130 . 1 404 Core DNA Replication Machinery Family AT2G20980 56.3 2.5e-118 422.5
Cmetu01g2696 . 1 200 Core DNA Replication Machinery Family AT1G80190 67.8 7.9e-76 280.4
Cmetu07g0908 . 44 188 Core DNA Replication Machinery Family AT3G12530 72.4 1.6e-60 229.2
Cmetu03g0030 . 1 184 Core DNA Replication Machinery Family AT1G19080 67.4 3.9e-69 258.1
Cmetu03g0030 . 1 184 Core DNA Replication Machinery Family AT3G55490 67.4 3.9e-69 258.1
Cmetu06g0031 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.0 2.4e-50 195.7
Cmetu11g1317 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1779.2
Cmetu12g1528 . 104 726 Core DNA Replication Machinery Family AT1G67630 61.8 1.7e-217 752.7
Cmetu11g0430 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.1 5.1e-185 644.4
Cmetu09g0829 . 10 364 Core DNA Replication Machinery Family AT5G41880 63.3 8.9e-144 507.3
Cmetu08g0422 . 1 1048 Core DNA Replication Machinery Family AT5G63960 79.2 0.0e+00 1686.0
Cmetu04g0761 . 1 444 Core DNA Replication Machinery Family AT2G42120 75.0 4.9e-203 704.1
Cmetu11g0430 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.1 5.1e-185 644.4
Cmetu09g1681 . 1 125 Core DNA Replication Machinery Family AT1G09815 60.8 2.6e-37 151.8
Cmetu11g2291 . 1 2101 Core DNA Replication Machinery Family AT1G08260 70.4 0.0e+00 2935.6
Cmetu09g1641 . 7 710 Core DNA Replication Machinery Family AT1G08260 76.1 0.0e+00 1131.7
Cmetu11g2291 . 25 2208 Core DNA Replication Machinery Family AT2G27120 67.1 0.0e+00 2906.3
Cmetu09g1641 . 29 710 Core DNA Replication Machinery Family AT2G27120 74.6 0.0e+00 1082.0
Cmetu09g1641 . 722 1215 Core DNA Replication Machinery Family AT2G27120 51.6 8.0e-134 476.5
Cmetu12g1449 . 1 258 Core DNA Replication Machinery Family AT5G22110 77.9 1.1e-121 434.1
Cmetu12g0662 . 7 218 Core DNA Replication Machinery Family AT5G22110 58.2 1.2e-56 218.0
Cmetu05g0121 . 1 927 Core DNA Replication Machinery Family AT5G22010 63.2 5.9e-304 1040.4
Cmetu06g1240 . 1 334 Core DNA Replication Machinery Family AT1G63160 91.0 6.1e-174 607.1
Cmetu08g0376 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 3.0e-179 624.8
Cmetu07g2093 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 2.7e-153 538.5
Cmetu03g1930 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.8 1.6e-154 542.7
Cmetu05g1912 . 26 590 Core DNA Replication Machinery Family AT2G06510 66.3 3.4e-234 808.1
Cmetu06g1804 . 32 705 Core DNA Replication Machinery Family AT2G06510 50.7 1.3e-198 689.9
Cmetu02g1294 . 1 611 Core DNA Replication Machinery Family AT5G08020 66.7 7.1e-237 817.0
Cmetu06g1804 . 10 813 Core DNA Replication Machinery Family AT5G45400 52.2 1.0e-233 807.0
Cmetu02g1294 . 6 606 Core DNA Replication Machinery Family AT5G61000 65.3 7.1e-232 800.4
Cmetu06g1804 . 5 800 Core DNA Replication Machinery Family AT4G19130 53.8 6.4e-230 794.3
Cmetu02g0333 . 1 225 Core DNA Replication Machinery Family AT3G02920 50.2 1.4e-55 213.4
Cmetu02g1464 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.5 1.4e-188 656.0
Cmetu06g2653 . 1 1103 Core DNA Replication Machinery Family AT1G08840 53.0 1.1e-301 1033.1
Cmetu07g2177 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 4.1e-115 411.4
Cmetu11g1276 . 1 805 Core DNA Replication Machinery Family AT1G08130 65.6 9.7e-295 1009.6
Cmetu11g1276 . 205 805 Core DNA Replication Machinery Family AT1G49250 68.6 1.1e-240 829.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006625 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38