Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1942 ATGCTTCAATCTTTTGATCGTGCTTCAAGAGTGAGCAAACGCTTCTGTCATAGTTGCAAGATCTTTGGTTTATCCTCTGTTGTAAGTGGTAGCGGCCATCATTTTAGACTTAATAGTGCTATGAAAGAGATTAAAGTCAAAGGTGGTTCTAATGCAGATCCTCATCCGTTGAACGATGAAACACATGCACAACTGCCTTGTGCTATTCAGGGATGTTCAGCATCAAATGTGCAGTGCACCCCTGAAATTGAAAAGAAGTATGTGCATCGTGTTTATGATGCCATTGCACCCCACTTTAGTTCCACTCGATTTGCAAAGTGGCCAAAAGTTGCATCATTCTTATCCTCATTACCTCTAGGGTCTCTCGTCTTGGATGCTGGCTGTGGTAATGGAAAGTACTTGGGTTATAATCCCAACTGCTTTTTTATTGGATGTGATATTAGTGCCCAACTTATCAAAATTTGTAATGAACGGGGCCACGAAGTTTTGGTGGCTGATGCTGTAAATCTTCCTTACAGAACTGGTTTTGGTGATGCAGCTATCTCTATAGCTGTATTACATCATCTAAGTACTGAGAAGAGGAGGAAGAAAGCAATTGAAGAATTAATACGCGTTGTCAAAAAAGGTGGCCTGGTTTTAATAACAGTCTGGGCTGTTGAGCAAGAGGACAAATCTTTATTGACGAAATGGATGCCACTTTCAGAGAAGTATGTTGAAGAGTGGGTTGGACCTGGTAGTCCACGTGTTCGTAGTCCATCATCAATGGCACTTGAAAGCATTCCTGAAATGAATGAAATAACTCAGGTATTTGTCTAA 816 40.93 MLQSFDRASRVSKRFCHSCKIFGLSSVVSGSGHHFRLNSAMKEIKVKGGSNADPHPLNDETHAQLPCAIQGCSASNVQCTPEIEKKYVHRVYDAIAPHFSSTRFAKWPKVASFLSSLPLGSLVLDAGCGNGKYLGYNPNCFFIGCDISAQLIKICNERGHEVLVADAVNLPYRTGFGDAAISIAVLHHLSTEKRRKKAIEELIRVVKKGGLVLITVWAVEQEDKSLLTKWMPLSEKYVEEWVGPGSPRVRSPSSMALESIPEMNEITQVFV 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25853034 25855915 + PI0020822.2 Cmetu03g1942 352086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1942 271 PANTHER UNCHARACTERIZED 70 229 - -
Cmetu03g1942 271 Gene3D Vaccinia Virus protein VP39 99 249 IPR029063 -
Cmetu03g1942 271 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 80 240 IPR029063 -
Cmetu03g1942 271 CDD AdoMet_MTases 123 219 - -
Cmetu03g1942 271 Pfam Methyltransferase domain 124 214 IPR013216 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1942 K10770 - - csv:101216715 507.679
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g353 . . . . . . . . . . . . . . Sed11g2298 . . Bhi04g02498 Tan11g0086 Cmetu03g1942 . Hepe02g3439 . Lcy10g2330 . . . . . . . . . Cone17ag1247 . . . . Cme03g01869 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00763 . . . Clacu11g1060 Cmu11g0920 . . . Chy03g00067 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007178 1 1 1 1 1 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37