Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1966 ATGATGAACGGTCATGATGCGGAGACGTTGGTGTACGTTCACGGCGACCTCGATTTGAAGATCATTGAGGCGCGCCGTTTGCCCAATATGGATTTGCTATCGGAACGTATTCGGCGGTTTTTTACTGTTTTTAGTTCTTGTCGGAAACCGTTTTCCAAGAAGAAGGATAAGGAGGATCACCAGCATCACCGGAAGATTATTACTAGTGATCCCTACGTCACCGTTTGTCTTGCTGGAGCGACGGTTGCTCGGACACGAGTTATTTCGAACTCGCAGAACCCTATCTGGAATGAGCACTTCAAAATCCCTCTTGCTCATCCGGTCTCACAGGTGGAGTTTCATGTCAAGGATAATGATGTGTTTGGTGCGGATTTGATTGGTATTGCAACGGTCCCTGCGCGTAGAGTTCTTTCTGGCGAAACCATTGATGATTGGTTTCCGATTATCGGTTCGTTCGGGAAACCGCCGAAGCCGGATTCGGCTGTGCGTTTGGAAATGAAATTCACCAAGTGCGAGGACAATCCTCTGTACCGTTATGGCATTGCGGCCGATCCAGAACATTTTGGCGTTCGGAATTGCTATTTTCCGGTACGACATGGGGGTTCGGTAACGCTTTATCAGGACGCGCACGTTCCTGAGTCCATGTTGGAGAAGATTCAACTGGAAAAGGGGAATCTGTATCAGCATGAGAATTGCTGGGAGGATATATGCCATGCAATTTTGGAGGCTCACCATTTAGTCTACATTGCCGGTTGGTCCATATATCATAAGGTGAAGCTTGTGAGAGAGCCTTCAAAGCCGTTGCCTAATGGTGGGAATTTGAATTTGGGAGAGTTGCTCAAGTACAAGTCACAAGAAGGGGTGCGAGTCTTGTTATTGGTTTGGGATGACAAGACTTCCCACAGCAAGTTCTTCATCAATACGGCTGGAGTGATGCAGACTCATGATGAGGAGACCCGAAAGTTTTTCAAGCACTCTTCTGTATCATGTGTGTTGTCACCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAACAGGTTGTTGGAACGCTTTTCACCCATCACCAGAAGTGTGTAATTGTGGATACACAAGCATCTGGAAATTATCGGAAGATAACTTCTTTTATTGGAGGACTCGACCTTTGCGATGGCCGTTACGATACTCCTGAGCACCGGTTGTTAAAAGATCTTGACACTGTATTTGATGAAGATTATCATAATCCAACCTTTTCCGGAGGTACAAAGGGTCCTCGGCAGCCATGGCATGATTTACATTGCAAAATTGAAGGGCCTGCGGCATATGATGTGCTCACTAACTTTGAACAACGATGGCGAAAAGCCACAAAATGGTCTGAATTAGGTCAGCGATTCAAAAGAGTATCACATTGGCATGAAGATGCTTTAATAAAGTTGGAACGCATATCTTGGATACTTAGTCCATCTCAGTCAATCCCCAACGATGATCCTTTGTTATGGGTTTCCAAGGAAAATGATCCTGACAACTGGCATGTTCAGGTTTTCCGATCCATAGATTCAGGATCTTTGAAAGGATTTCCCAAAGATGTTTTTCAAGCTGAGTTGCAGAATCTGGTTTGTGCAAAAAATTTGGTTATTGACAAAAGCATTCAAACAGCATATATTCAAGCAATAAGATCTGCCCAACACTTCATATACATTGAGAATCAGTATTTTCTTGGATCATCCTTTGCATGGCCTTCGTACAAAGAAGCAGGTGCTGATAATCTTATTCCTATGGAGTTGGCGTTGAAGATTGCTAGTAAGATAAGAGCTAATGAGAGGTTTGCTGTCTACGTTGTGATACCAATGTGGCCTGAAGGGGTTCCCTCTTCTGTTTCTGTGCAAGAAATCCTGTTTTGGCAGGTAATGAGGGTCAGACAATCCAAATGA 1911 44.43 MMNGHDAETLVYVHGDLDLKIIEARRLPNMDLLSERIRRFFTVFSSCRKPFSKKKDKEDHQHHRKIITSDPYVTVCLAGATVARTRVISNSQNPIWNEHFKIPLAHPVSQVEFHVKDNDVFGADLIGIATVPARRVLSGETIDDWFPIIGSFGKPPKPDSAVRLEMKFTKCEDNPLYRYGIAADPEHFGVRNCYFPVRHGGSVTLYQDAHVPESMLEKIQLEKGNLYQHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTAGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNYRKITSFIGGLDLCDGRYDTPEHRLLKDLDTVFDEDYHNPTFSGGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSELGQRFKRVSHWHEDALIKLERISWILSPSQSIPNDDPLLWVSKENDPDNWHVQVFRSIDSGSLKGFPKDVFQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSFAWPSYKEAGADNLIPMELALKIASKIRANERFAVYVVIPMWPEGVPSSVSVQEILFWQVMRVRQSK 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4875945 4881944 - PI0013866.1 Cmetu03g1966 352110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1966 636 Gene3D Endonuclease Chain A 215 469 - -
Cmetu03g1966 636 Pfam Phospholipase D Active site motif 352 386 IPR001736 GO:0003824
Cmetu03g1966 636 FunFam Phospholipase D delta 223 466 - -
Cmetu03g1966 636 Pfam C2 domain 15 148 IPR000008 -
Cmetu03g1966 636 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 170 IPR035892 -
Cmetu03g1966 636 CDD C2_plant_PLD 11 169 - -
Cmetu03g1966 636 ProSiteProfiles C2 domain profile. 1 146 IPR000008 -
Cmetu03g1966 636 SUPERFAMILY Phospholipase D/nuclease 226 457 - -
Cmetu03g1966 636 Gene3D Endonuclease Chain A 522 635 - -
Cmetu03g1966 636 SMART C2_3c 16 145 IPR000008 -
Cmetu03g1966 636 PANTHER PHOSPHOLIPASE D 8 629 IPR015679 -
Cmetu03g1966 636 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 351 386 IPR001736 GO:0003824
Cmetu03g1966 636 Gene3D C2 domain 13 176 IPR035892 -
Cmetu03g1966 636 SUPERFAMILY Phospholipase D/nuclease 540 619 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1966 K01115 - - csv:101213442 1255.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1966 Cmetu-Chr3:4875945 Cmetu04g1752 Cmetu-Chr4:3473119 1.50E-269 dispersed
Cmetu03g1966 Cmetu-Chr3:4875945 Cmetu03g1574 Cmetu-Chr3:4327773 3.80E-140 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g0904 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 81.0 0.0e+00 1408.3
Cmetu07g1549 . 1 807 Phospholipase D Gene Family (Wang group) AT1G52570 75.6 0.0e+00 1339.3
Cmetu03g1574 . 4 793 Phospholipase D Gene Family (Wang group) AT1G52570 64.5 0.0e+00 1121.3
Cmetu04g0608 . 31 761 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 1.5e-268 922.5
Cmetu01g0904 . 6 808 Phospholipase D Gene Family (Wang group) AT3G15730 81.2 0.0e+00 1411.7
Cmetu07g1549 . 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 75.8 0.0e+00 1344.7
Cmetu03g1574 . 4 793 Phospholipase D Gene Family (Wang group) AT3G15730 65.0 0.0e+00 1114.4
Cmetu03g1574 . 58 793 Phospholipase D Gene Family (Wang group) AT5G25370 66.7 1.4e-303 1038.9
Cmetu07g1549 . 72 807 Phospholipase D Gene Family (Wang group) AT5G25370 63.9 7.8e-294 1006.5
Cmetu01g0904 . 73 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.3 7.3e-292 1000.0
Cmetu11g2416 . 129 1091 Phospholipase D Gene Family (Wang group) AT2G42010 69.9 0.0e+00 1398.3
Cmetu06g0982 . 26 851 Phospholipase D Gene Family (Wang group) AT2G42010 69.2 0.0e+00 1245.3
Cmetu04g1752 . 4 856 Phospholipase D Gene Family (Wang group) AT2G42010 52.5 1.5e-264 909.8
Cmetu03g1966 . 4 628 Phospholipase D Gene Family (Wang group) AT2G42010 54.0 1.5e-197 687.2
Cmetu11g0526 . 3 242 Phospholipase D Gene Family (Wang group) AT2G42010 50.4 9.7e-67 252.7
Cmetu11g2416 . 333 1091 Phospholipase D Gene Family (Wang group) AT4G00240 76.9 0.0e+00 1225.3
Cmetu06g0982 . 82 851 Phospholipase D Gene Family (Wang group) AT4G00240 69.1 0.0e+00 1134.0
Cmetu04g1752 . 71 856 Phospholipase D Gene Family (Wang group) AT4G00240 54.8 4.8e-254 874.4
Cmetu03g1966 . 65 628 Phospholipase D Gene Family (Wang group) AT4G00240 56.5 1.5e-186 650.2
Cmetu06g0982 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.3 6.3e-244 840.5
Cmetu11g2416 . 271 876 Phospholipase D Gene Family (Wang group) AT4G11830 65.4 1.5e-237 819.3
Cmetu03g1966 . 13 632 Phospholipase D Gene Family (Wang group) AT4G11830 51.4 6.8e-182 634.4
Cmetu06g0982 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11840 65.0 0.0e+00 1135.6
Cmetu11g2416 . 253 1091 Phospholipase D Gene Family (Wang group) AT4G11840 63.4 0.0e+00 1113.2
Cmetu04g1752 . 10 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.8 3.5e-250 861.7
Cmetu03g1966 . 13 628 Phospholipase D Gene Family (Wang group) AT4G11840 50.9 3.0e-177 619.4
Cmetu06g0982 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11850 68.0 0.0e+00 1198.0
Cmetu11g2416 . 253 1091 Phospholipase D Gene Family (Wang group) AT4G11850 68.1 0.0e+00 1180.6
Cmetu04g1752 . 10 856 Phospholipase D Gene Family (Wang group) AT4G11850 51.9 4.3e-256 881.3
Cmetu03g1966 . 13 628 Phospholipase D Gene Family (Wang group) AT4G11850 51.9 8.1e-186 647.9
Cmetu04g1752 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.7 2.0e-299 1025.0
Cmetu03g1966 . 7 628 Phospholipase D Gene Family (Wang group) AT4G35790 67.4 4.1e-265 911.0
Cmetu11g0526 . 4 242 Phospholipase D Gene Family (Wang group) AT4G35790 70.7 7.9e-99 358.6
Cmetu11g1217 . 40 1126 Phospholipase D Gene Family (Wang group) AT3G05630 60.7 0.0e+00 1316.6
Cmetu05g0473 . 35 1078 Phospholipase D Gene Family (Wang group) AT3G05630 55.3 0.0e+00 1104.0
Cmetu11g1217 . 1 1003 Phospholipase D Gene Family (Wang group) AT3G16785 72.2 0.0e+00 1448.3
Cmetu05g0473 . 1 957 Phospholipase D Gene Family (Wang group) AT3G16785 52.2 5.9e-281 964.1
Cmetu01g0904 . 6 808 Phospholipase D Gene Family (Wang group) AT3G15730 81.2 0.0e+00 1411.7
Cmetu07g1549 . 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 75.8 0.0e+00 1344.7
Cmetu03g1574 . 4 793 Phospholipase D Gene Family (Wang group) AT3G15730 65.0 0.0e+00 1114.4
Cmetu01g0904 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 81.0 0.0e+00 1408.3
Cmetu07g1549 . 1 807 Phospholipase D Gene Family (Wang group) AT1G52570 75.6 0.0e+00 1339.3
Cmetu03g1574 . 4 793 Phospholipase D Gene Family (Wang group) AT1G52570 64.5 0.0e+00 1121.3
Cmetu11g2416 . 129 1091 Phospholipase D Gene Family (Wang group) AT2G42010 69.9 0.0e+00 1398.3
Cmetu06g0982 . 26 851 Phospholipase D Gene Family (Wang group) AT2G42010 69.2 0.0e+00 1245.3
Cmetu04g1752 . 4 856 Phospholipase D Gene Family (Wang group) AT2G42010 52.5 1.5e-264 909.8
Cmetu03g1966 . 4 628 Phospholipase D Gene Family (Wang group) AT2G42010 54.0 1.5e-197 687.2
Cmetu11g0526 . 3 242 Phospholipase D Gene Family (Wang group) AT2G42010 50.4 9.7e-67 252.7
Cmetu11g2416 . 333 1091 Phospholipase D Gene Family (Wang group) AT4G00240 76.9 0.0e+00 1225.3
Cmetu06g0982 . 82 851 Phospholipase D Gene Family (Wang group) AT4G00240 69.1 0.0e+00 1134.0
Cmetu04g1752 . 71 856 Phospholipase D Gene Family (Wang group) AT4G00240 54.8 4.8e-254 874.4
Cmetu03g1966 . 65 628 Phospholipase D Gene Family (Wang group) AT4G00240 56.5 1.5e-186 650.2
Cmetu06g0982 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11850 68.0 0.0e+00 1198.0
Cmetu11g2416 . 253 1091 Phospholipase D Gene Family (Wang group) AT4G11850 68.1 0.0e+00 1180.6
Cmetu04g1752 . 10 856 Phospholipase D Gene Family (Wang group) AT4G11850 51.9 4.3e-256 881.3
Cmetu03g1966 . 13 628 Phospholipase D Gene Family (Wang group) AT4G11850 51.9 8.1e-186 647.9
Cmetu06g0982 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.3 6.3e-244 840.5
Cmetu11g2416 . 271 876 Phospholipase D Gene Family (Wang group) AT4G11830 65.4 1.5e-237 819.3
Cmetu03g1966 . 13 632 Phospholipase D Gene Family (Wang group) AT4G11830 51.4 6.8e-182 634.4
Cmetu06g0982 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11840 65.0 0.0e+00 1135.6
Cmetu11g2416 . 253 1091 Phospholipase D Gene Family (Wang group) AT4G11840 63.4 0.0e+00 1113.2
Cmetu04g1752 . 10 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.8 3.5e-250 861.7
Cmetu03g1966 . 13 628 Phospholipase D Gene Family (Wang group) AT4G11840 50.9 3.0e-177 619.4
Cmetu04g1752 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.7 2.0e-299 1025.0
Cmetu03g1966 . 7 628 Phospholipase D Gene Family (Wang group) AT4G35790 67.4 4.1e-265 911.0
Cmetu11g0526 . 4 242 Phospholipase D Gene Family (Wang group) AT4G35790 70.7 7.9e-99 358.6
Cmetu04g0608 . 31 761 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 1.5e-268 922.5
Cmetu03g1574 . 58 793 Phospholipase D Gene Family (Wang group) AT5G25370 66.7 1.4e-303 1038.9
Cmetu07g1549 . 72 807 Phospholipase D Gene Family (Wang group) AT5G25370 63.9 7.8e-294 1006.5
Cmetu01g0904 . 73 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.3 7.3e-292 1000.0
Cmetu11g1217 . 1 1003 Phospholipase D Gene Family (Wang group) AT3G16785 72.2 0.0e+00 1448.3
Cmetu05g0473 . 1 957 Phospholipase D Gene Family (Wang group) AT3G16785 52.2 5.9e-281 964.1
Cmetu11g1217 . 40 1126 Phospholipase D Gene Family (Wang group) AT3G05630 60.7 0.0e+00 1316.6
Cmetu05g0473 . 35 1078 Phospholipase D Gene Family (Wang group) AT3G05630 55.3 0.0e+00 1104.0
Cmetu01g0904 . 6 808 Phospholipase D Gene Family (Wang group) AT3G15730 81.2 0.0e+00 1411.7
Cmetu07g1549 . 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 75.8 0.0e+00 1344.7
Cmetu03g1574 . 4 793 Phospholipase D Gene Family (Wang group) AT3G15730 65.0 0.0e+00 1114.4
Cmetu01g0904 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 81.0 0.0e+00 1408.3
Cmetu07g1549 . 1 807 Phospholipase D Gene Family (Wang group) AT1G52570 75.6 0.0e+00 1339.3
Cmetu03g1574 . 4 793 Phospholipase D Gene Family (Wang group) AT1G52570 64.5 0.0e+00 1121.3
Cmetu03g1574 . 58 793 Phospholipase D Gene Family (Wang group) AT5G25370 66.7 1.4e-303 1038.9
Cmetu07g1549 . 72 807 Phospholipase D Gene Family (Wang group) AT5G25370 63.9 7.8e-294 1006.5
Cmetu01g0904 . 73 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.3 7.3e-292 1000.0
Cmetu04g0608 . 31 761 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 1.5e-268 922.5
Cmetu11g2416 . 129 1091 Phospholipase D Gene Family (Wang group) AT2G42010 69.9 0.0e+00 1398.3
Cmetu06g0982 . 26 851 Phospholipase D Gene Family (Wang group) AT2G42010 69.2 0.0e+00 1245.3
Cmetu04g1752 . 4 856 Phospholipase D Gene Family (Wang group) AT2G42010 52.5 1.5e-264 909.8
Cmetu03g1966 . 4 628 Phospholipase D Gene Family (Wang group) AT2G42010 54.0 1.5e-197 687.2
Cmetu11g0526 . 3 242 Phospholipase D Gene Family (Wang group) AT2G42010 50.4 9.7e-67 252.7
Cmetu11g2416 . 333 1091 Phospholipase D Gene Family (Wang group) AT4G00240 76.9 0.0e+00 1225.3
Cmetu06g0982 . 82 851 Phospholipase D Gene Family (Wang group) AT4G00240 69.1 0.0e+00 1134.0
Cmetu04g1752 . 71 856 Phospholipase D Gene Family (Wang group) AT4G00240 54.8 4.8e-254 874.4
Cmetu03g1966 . 65 628 Phospholipase D Gene Family (Wang group) AT4G00240 56.5 1.5e-186 650.2
Cmetu06g0982 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11850 68.0 0.0e+00 1198.0
Cmetu11g2416 . 253 1091 Phospholipase D Gene Family (Wang group) AT4G11850 68.1 0.0e+00 1180.6
Cmetu04g1752 . 10 856 Phospholipase D Gene Family (Wang group) AT4G11850 51.9 4.3e-256 881.3
Cmetu03g1966 . 13 628 Phospholipase D Gene Family (Wang group) AT4G11850 51.9 8.1e-186 647.9
Cmetu06g0982 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.3 6.3e-244 840.5
Cmetu11g2416 . 271 876 Phospholipase D Gene Family (Wang group) AT4G11830 65.4 1.5e-237 819.3
Cmetu03g1966 . 13 632 Phospholipase D Gene Family (Wang group) AT4G11830 51.4 6.8e-182 634.4
Cmetu06g0982 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11840 65.0 0.0e+00 1135.6
Cmetu11g2416 . 253 1091 Phospholipase D Gene Family (Wang group) AT4G11840 63.4 0.0e+00 1113.2
Cmetu04g1752 . 10 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.8 3.5e-250 861.7
Cmetu03g1966 . 13 628 Phospholipase D Gene Family (Wang group) AT4G11840 50.9 3.0e-177 619.4
Cmetu04g1752 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.7 2.0e-299 1025.0
Cmetu03g1966 . 7 628 Phospholipase D Gene Family (Wang group) AT4G35790 67.4 4.1e-265 911.0
Cmetu11g0526 . 4 242 Phospholipase D Gene Family (Wang group) AT4G35790 70.7 7.9e-99 358.6
Cmetu11g1217 . 1 1003 Phospholipase D Gene Family (Wang group) AT3G16785 72.2 0.0e+00 1448.3
Cmetu05g0473 . 1 957 Phospholipase D Gene Family (Wang group) AT3G16785 52.2 5.9e-281 964.1
Cmetu11g1217 . 40 1126 Phospholipase D Gene Family (Wang group) AT3G05630 60.7 0.0e+00 1316.6
Cmetu05g0473 . 35 1078 Phospholipase D Gene Family (Wang group) AT3G05630 55.3 0.0e+00 1104.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001558 0 7 3 2 2 2 3 2 2 2 2 2 3 2 3 3 2 2 3 2 2 2 2 3 2 2 2 4 2 2 72