Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g1967 ATGCCGAGCATTTCGGCCCTCTATTCCATTCAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTATCGATGGCAAGGTATACGATTTGACTTCATATTTGGATGAGCATCCTGGTGGAGATGATGTTATTGTGGCTGCAACTGGCAGAGATGCCACAGATGATTTTGAAGATGCTGGTCATAGCAAAGATGCCAGGGAGTTGATGGAGAAGTTCTATATCGGCTTGCTTGATACATCTTCCTCGGATAGCCTAAAACTTGAAACGAATCAAGTAGATGGTTATGCAACTCGGGTTCAGACCTTGACAAAGCAATACTGGAAGGCCCCTGTTGCAGTAATTGGTATTTCTGTGGTACTTGGTTGGGTATACTTGCGCAAAAAGTGA 396 44.44 MPSISALYSIQEVSQHSSNDDCWIIIDGKVYDLTSYLDEHPGGDDVIVAATGRDATDDFEDAGHSKDARELMEKFYIGLLDTSSSDSLKLETNQVDGYATRVQTLTKQYWKAPVAVIGISVVLGWVYLRKK 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5555309 5558366 - PI0018190.1 Cmetu03g1967 352111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g1967 131 FunFam Cytochrome b5 type B 3 85 - -
Cmetu03g1967 131 SMART Cyt_b5_2 8 81 IPR001199 -
Cmetu03g1967 131 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cmetu03g1967 131 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cmetu03g1967 131 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cmetu03g1967 131 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cmetu03g1967 131 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Cmetu03g1967 131 Gene3D - 5 94 IPR036400 -
Cmetu03g1967 131 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cmetu03g1967 131 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 80 IPR001199 -
Cmetu03g1967 131 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 84 IPR036400 -
Cmetu03g1967 131 PANTHER CYTOCHROME B5 6 123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g1967 K23490 - - csv:101220127 259.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1967 Cmetu-Chr3:5555309 Cmetu09g1196 Cmetu-Chr9:134010 3.50E-24 dispersed
Cmetu03g1967 Cmetu-Chr3:5555309 Cmetu06g2442 Cmetu-Chr6:2639169 1.70E-26 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G53560 78.4 1.3e-58 222.6
Cmetu06g2442 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G53560 58.4 6.8e-47 183.7
Cmetu04g1222 . 4 131 NADPH P450 reductases AT5G53560 65.6 3.4e-46 181.4
Cmetu06g2442 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.3e-48 186.8
Cmetu04g1222 . 2 132 NADPH P450 reductases AT5G48810 62.4 3.0e-45 178.3
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G48810 59.6 1.1e-44 176.4
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G48810 55.1 1.1e-44 176.4
Cmetu06g2442 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.7e-51 196.8
Cmetu05g1957 . 43 153 NADPH P450 reductases AT2G32720 82.0 3.6e-48 188.0
Cmetu04g1222 . 21 132 NADPH P450 reductases AT2G32720 70.5 5.5e-41 164.1
Cmetu09g1196 . 22 133 NADPH P450 reductases AT2G32720 66.1 8.0e-40 160.2
Cmetu03g1967 . 1 130 NADPH P450 reductases AT1G26340 54.5 7.6e-38 153.7
Cmetu08g0889 . 2 281 NADPH P450 reductases AT5G17770 82.1 2.9e-132 468.4
Cmetu04g1430 . 2 280 NADPH P450 reductases AT5G17770 77.1 9.0e-126 446.8
Cmetu05g0368 . 56 293 NADPH P450 reductases AT5G17770 77.6 2.8e-111 398.7
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G53560 78.4 1.3e-58 222.6
Cmetu06g2442 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G53560 58.4 6.8e-47 183.7
Cmetu04g1222 . 4 131 NADPH P450 reductases AT5G53560 65.6 3.4e-46 181.4
Cmetu06g2442 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.3e-48 186.8
Cmetu04g1222 . 2 132 NADPH P450 reductases AT5G48810 62.4 3.0e-45 178.3
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G48810 59.6 1.1e-44 176.4
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G48810 55.1 1.1e-44 176.4
Cmetu06g2442 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.7e-51 196.8
Cmetu05g1957 . 43 153 NADPH P450 reductases AT2G32720 82.0 3.6e-48 188.0
Cmetu04g1222 . 21 132 NADPH P450 reductases AT2G32720 70.5 5.5e-41 164.1
Cmetu09g1196 . 22 133 NADPH P450 reductases AT2G32720 66.1 8.0e-40 160.2
Cmetu03g1967 . 1 130 NADPH P450 reductases AT1G26340 54.5 7.6e-38 153.7
Cmetu08g0889 . 2 281 NADPH P450 reductases AT5G17770 82.1 2.9e-132 468.4
Cmetu04g1430 . 2 280 NADPH P450 reductases AT5G17770 77.1 9.0e-126 446.8
Cmetu05g0368 . 56 293 NADPH P450 reductases AT5G17770 77.6 2.8e-111 398.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013997 0 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 2 0 1 1 0 1 0 1 0 1 1 2 1 24