Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g2001 ATGGCTTTGTTGACTGCTATGAATCCACGTCTCGCTTTATTGTTTTCACTGCTTTTGGTTCTTTCTTGCGGTTCTGCAGCTAATGTCGTATTGATTGGGACCAACGTTACTCTTTCTTTCGACTCCATTGAAGCTAATTTCGCTCCTTCAATAGAAAGTTCAGGAGAACCCGGGGTGTTATATCTGGCAAAGCCTCTTGATGCTTGTTCGACATTGGAAAATAAAGTTGTGGTGCCTGTAAACTCCAGTTCACCATTCGCGCTTATAGTTAGAGGAGGATGTAGCTTTGAGGATAAAGTGAGGAGAGCCCAAGTAGCTGGATTTAAAGCTGCAATCATTTATGACAATGAAGATGGTGGCTTAATTGCGATGGCAGGGAGCTCGGCTGGTATTAGAATACATGCTGTATTTGTTACTAAAACATCTGGCGAGACATTGAAGAAGTATGCAGGCTTGGCTAACGTTGAGATATGGATAGTTCCAAGCTTTGAAAACTCTGCATGGTCCATCATGGCTATCTCCTTTATTTCTCTTCTTGCAATGTCTGCAGTGCTTGCTACTTGTTTCTTCGTTCGAAGACATCGAATAAGACGAGGACGTCCTCGATCTTCTCATGCTCAAGAGTTTCGGGGAATGAGCAGGCGTGTAGTAAAAGCAATGCCAAGCCTGATATTTACGACGGCTTTAGAGGATAATTGCACATCTATAACATGTGCCATATGCCTTGAGGACTATACTCCTGGTGAGAAGCTCAGAATTCTACCATGCCGTCACAAATTTCATGCCCTCTGTGTGGACTCTTGGCTTACTGCTTGGAGAACCTTCTGCCCGGTTTGCAAGCGAGATGCAAGAACTAGCACCGGTGATCCACCACCTTCAGCATCGACACCATTGCTTTCGAGCACTCCCAGTTCTGTTGCTTCATCCTCTATATTATCTTCTTCTAGATCATCATTACCACCAAGCTCAGCCATTCAAATATCCCCATCATTAAGATCACCTTCGGTATCTCGAAACCACTCTCTCTCAAGCACTCCTTACCTTCACCAGTCTCTGAGATCCTCCTACCACCAATCTCCATCCTTGAGTGTGAGCAGAAGTTCAGTTGAACTCAGAAATGCATCCTCCCAAAGATCTTACACTTCTCATTTAATCTCACCGTATTCCTCGTGTTACCCATCTGTTTCACCTTTACATTCAAGATACATGATTCCGCATATTCCTAGTCCAAGCAATGCCTCACCAAGCATCATTGGTTCTTCTAGTCATCAACATAACCCCTTGCATTGTAGTGGGTCAGCTGCAAGCTTATCTCCATTTGCTTCGGCTCGGTCCCTACCTGAATGCTGA 1350 44.44 MALLTAMNPRLALLFSLLLVLSCGSAANVVLIGTNVTLSFDSIEANFAPSIESSGEPGVLYLAKPLDACSTLENKVVVPVNSSSPFALIVRGGCSFEDKVRRAQVAGFKAAIIYDNEDGGLIAMAGSSAGIRIHAVFVTKTSGETLKKYAGLANVEIWIVPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRGRPRSSHAQEFRGMSRRVVKAMPSLIFTTALEDNCTSITCAICLEDYTPGEKLRILPCRHKFHALCVDSWLTAWRTFCPVCKRDARTSTGDPPPSASTPLLSSTPSSVASSSILSSSRSSLPPSSAIQISPSLRSPSVSRNHSLSSTPYLHQSLRSSYHQSPSLSVSRSSVELRNASSQRSYTSHLISPYSSCYPSVSPLHSRYMIPHIPSPSNASPSIIGSSSHQHNPLHCSGSAASLSPFASARSLPEC 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25918439 25923218 - PI0027012.1 Cmetu03g2001 352145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g2001 449 SUPERFAMILY RING/U-box 231 293 - -
Cmetu03g2001 449 Gene3D - 29 159 - -
Cmetu03g2001 449 MobiDBLite consensus disorder prediction 284 344 - -
Cmetu03g2001 449 CDD PA_C_RZF_like 25 167 IPR044744 -
Cmetu03g2001 449 SUPERFAMILY PA domain 79 164 IPR046450 -
Cmetu03g2001 449 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 162 295 - -
Cmetu03g2001 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 285 IPR013083 -
Cmetu03g2001 449 MobiDBLite consensus disorder prediction 288 344 - -
Cmetu03g2001 449 Pfam PA domain 86 146 IPR003137 -
Cmetu03g2001 449 Pfam Ring finger domain 237 280 IPR001841 -
Cmetu03g2001 449 ProSiteProfiles Zinc finger RING-type profile. 238 280 IPR001841 -
Cmetu03g2001 449 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 27 160 - -
Cmetu03g2001 449 SMART ring_2 238 279 IPR001841 -
Cmetu03g2001 449 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 198 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g2001 K15692 - - csv:101218128 747.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g2001 Cmetu-Chr3:25918439 Cmetu04g2039 Cmetu-Chr4:340361 1.10E-08 dispersed
Cmetu03g2001 Cmetu-Chr3:25918439 Cmetu02g0954 Cmetu-Chr2:21170678 2.10E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1441 . . . . . . . . . . . . . . Sed11g2306 . . Bhi04g02514 Tan11g0071 Cmetu03g2001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00772 Cam11g0807 Cec11g0788 Cco11g0794 Clacu11g1051 Cmu11g0912 Cre11g1252 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005523 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 40