Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g2033 ATGGTGAGGAAATGCTCACACTGTGGAAATGTGGGTCACAATTCAAGAACTTGCACCATTCAAAAGCATAAAGAAACCAAGTTTAAGTTATTTGGAGTTCAACTAATTGAGAATGGAACAACTCATCATCATCATTATACCACCTTGTTGAAGAAGAGTATTAGTTTGGATTCTTTGCCTTCTTCTTCTTCTTCAGCTTCTTCATCTTCTTCATCTTTGTCGTCATCTTCTTCTTCTGAGAAATTGTCAAATGGATATCTCTCCGATGGTCTCATCGTCAAAACCCACGAAAGAAAAAAAGGTGTACCATGGAGTGAGGAGGAGCATAGAGTGTTTCTAGTTGGGTTAGAAAAGCTTGGAAAAGGAGATTGGAGAGGAATTTCGAGGAAATTTGTGACTACAAGAACTCCGACCCAAGTGGCTAGTCATGCACAAAAGTATTTTCTACGACTCACAACTCTCAACAAAAGAAAACACCGTCGCCCCAGCCTTTTTGATGGACAAATTGACAGTGCAAGTGGTCGAAAAAGGCAGCAGCAGCAGCAACAACAACAATTGAAACCAACCAATATTAATAATATCCAACCAGCTTCATCCAATAATATTTCCTTTGGGAATCCAACTCCATTTCAAAATATTTCAAAATTATCAAATCTCAATTGGTTTGATCATCATGATAATCAACATCATCATGAGCCATATTTCAAGTTTCTTCAATCCCCCATCAACAAGTCTTCAAGCTCAATTATGATCAACAATTTTCAAACAACAACCAATCATCATCATCATCATCATCGTCATCAACCTGATTTGCAGCTAAGTTTGTCCACTCCAAAGCCAGTACTTGAACAAGTAGCTCAGTGA 864 38.08 MVRKCSHCGNVGHNSRTCTIQKHKETKFKLFGVQLIENGTTHHHHYTTLLKKSISLDSLPSSSSSASSSSSSLSSSSSSEKLSNGYLSDGLIVKTHERKKGVPWSEEEHRVFLVGLEKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLTTLNKRKHRRPSLFDGQIDSASGRKRQQQQQQQQLKPTNINNIQPASSNNISFGNPTPFQNISKLSNLNWFDHHDNQHHHEPYFKFLQSPINKSSSSIMINNFQTTTNHHHHHHRHQPDLQLSLSTPKPVLEQVAQ 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 621990 624151 - PI0008395.1 Cmetu03g2033 352177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g2033 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 152 IPR017930 -
Cmetu03g2033 287 MobiDBLite consensus disorder prediction 172 209 - -
Cmetu03g2033 287 FunFam transcription factor MYB1R1 102 153 - -
Cmetu03g2033 287 SMART sant 100 150 IPR001005 -
Cmetu03g2033 287 MobiDBLite consensus disorder prediction 258 287 - -
Cmetu03g2033 287 Pfam Myb-like DNA-binding domain 103 148 IPR001005 -
Cmetu03g2033 287 SUPERFAMILY Homeodomain-like 97 152 IPR009057 -
Cmetu03g2033 287 Gene3D - 102 155 - -
Cmetu03g2033 287 ProSiteProfiles Myb-like domain profile. 96 148 IPR001005 -
Cmetu03g2033 287 CDD SANT 103 148 IPR001005 -
Cmetu03g2033 287 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Cmetu03g2033 287 PANTHER TRANSCRIPTION FACTOR KUA1 3 265 - -
Cmetu03g2033 287 MobiDBLite consensus disorder prediction 159 209 - -
Cmetu03g2033 287 NCBIfam myb-like DNA-binding domain, SHAQKYF class 99 150 IPR006447 GO:0003677
Cmetu03g2033 287 MobiDBLite consensus disorder prediction 271 287 - -
Cmetu03g2033 287 MobiDBLite consensus disorder prediction 61 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g2033 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0606 Cmetu-Chr2:1963439 Cmetu03g2033 Cmetu-Chr3:621990 2.40E-38 dispersed
Cmetu03g2033 Cmetu-Chr3:621990 Cmetu07g1658 Cmetu-Chr7:3461775 8.70E-36 dispersed
Cmetu03g2033 Cmetu-Chr3:621990 Cmetu10g0115 Cmetu-Chr10:18972566 5.10E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g70 . . . . . . . . . Cmo12g00575 . . . Car12g00583 Sed08g1764 Cpe07g00556 . Bhi04g00508 Tan02g1642 Cmetu03g2033 . Hepe08g1387 . Lcy13g2180 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00635 . . . . . . . . . . . . . . . . . . Lsi08g01578 Csa02g01841 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001505 1 4 1 4 4 2 3 2 2 1 2 2 3 2 2 3 2 4 3 2 2 3 2 2 2 2 2 4 2 2 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7645 PF00249 Myb_DNA-binding 1.80E-10 CL0123 Cmetu TF