Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g2101 ATGGTTTACTCCGACAAAATGCAAGAAATTGCAGCCAAAATGGGTTTCACACTCTCCGATTTCGCCGACACTTTGGAACAAGAACGCCGCAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTTGTTTCCCATGCCATTGATTGTTGTAGGCAGCAGTTATCGGGGACGACGACGGAGAATCGTCAATCCGAGTGTTCTGAGCAGACTTCCAGTGATATGGGTCCGGTTCTTGAGGAATTTATTCCCATTAACAGAAATGGGGTTTCGGATTTTGAAAAAACGGAGAAGAATAACAAAAACGATGACTCTGATTTAAATAATTTGAATTTGGCTCCGTCCGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTGCTCCCTTGAATCAGGACCTGCAGGAGAACACGCCGGTTGTTGAGGTCAATAGAAATGGCGGCGCTTTCCGGCCGTTTCAAAAGGAGAAAACCGGTGGCGGCGGTGGCGGGGGAGGAGCATCGTCGTCTTCAGCTCCGGCTCCGGCTGCGGAAACGAGCTCGACGACGGAAACGGGTTCAGGCGGAAGTAGTCGACGGGAAGAGAAGGAAGCGCAGAATCAGAGGAAACAGAGACGTTGCTGGTCGCCGGAGCTTCACCGGCGTTTCCTTCATGCGCTTCAGCAGCTCGGAGGGTCCCATGTGGCGACGCCAAAGCAAATAAGAGAATTGATGAAGGTGGATGGTCTTACCAACGATGAAGTGAAAAGTCATCTACAGAAGTATCGTCTGCACACGAGACGACCAACTCCGACGATCCACAACAACGAGGGCGGCCATGCGCCGCAGTTCCTAGTGGTTGGCGGCATATGGGTACCAGCAGCAGAGTACGCCGCTGTGTCCACCACCACTTCATCTGGAGAAGTGGTCAGTGCCGCTACCACCAACGGAATTTATGCACCGGTGGTGGCAGCGGCAGCGCCGCAGCCAATAGCTAGCACAGTTCAAAAGCCGAAGCCGAAGCCCAAGATTCATTCATCCGCCGCGGTTGCCGCCGTGGAATGTAATTCTCCGACTACATCTTCGTCTACTCATACGTCGTCAGTTTCACCAGCTTCTTCTTGA 1119 52.46 MVYSDKMQEIAAKMGFTLSDFADTLEQERRKVLMFQRELPLCLQLVSHAIDCCRQQLSGTTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFEKTEKNNKNDDSDLNNLNLAPSDWLRSAQLWNQTSDPAPLNQDLQENTPVVEVNRNGGAFRPFQKEKTGGGGGGGGASSSSAPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTTSSGEVVSAATTNGIYAPVVAAAAPQPIASTVQKPKPKPKIHSSAAVAAVECNSPTTSSSTHTSSVSPASS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16387252 16390148 + PI0026758.1 Cmetu03g2101 352245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g2101 372 MobiDBLite consensus disorder prediction 331 372 - -
Cmetu03g2101 372 FunFam Myb family transcription factor 207 265 - -
Cmetu03g2101 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Cmetu03g2101 372 MobiDBLite consensus disorder prediction 177 193 - -
Cmetu03g2101 372 MobiDBLite consensus disorder prediction 91 113 - -
Cmetu03g2101 372 MobiDBLite consensus disorder prediction 150 212 - -
Cmetu03g2101 372 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Cmetu03g2101 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 327 IPR044787 GO:0003700|GO:0006355
Cmetu03g2101 372 MobiDBLite consensus disorder prediction 350 372 - -
Cmetu03g2101 372 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Cmetu03g2101 372 Gene3D - 207 265 - -
Cmetu03g2101 372 MobiDBLite consensus disorder prediction 194 212 - -
Cmetu03g2101 372 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g2101 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0350 Cmetu-Chr2:17727351 Cmetu03g2101 Cmetu-Chr3:16387252 1.40E-43 dispersed
Cmetu03g2101 Cmetu-Chr3:16387252 Cmetu05g0038 Cmetu-Chr5:1036085 1.20E-40 dispersed
Cmetu10g0277 Cmetu-Chr10:20208522 Cmetu03g2101 Cmetu-Chr3:16387252 2.70E-71 wgd
Cmetu11g1716 Cmetu-Chr11:20917266 Cmetu03g2101 Cmetu-Chr3:16387252 9.90E-10 wgd
Cmetu03g2101 Cmetu-Chr3:16387252 Cmetu08g1522 Cmetu-Chr8:6644500 5.70E-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu06g1509 . 241 442 G2-like Transcription Factor Family AT5G16560 57.1 3.1e-47 186.4
Cmetu04g1719 . 178 383 G2-like Transcription Factor Family AT5G16560 50.9 1.4e-39 161.0
Cmetu04g2692 . 1 162 G2-like Transcription Factor Family AT5G42630 59.3 1.6e-37 153.3
Cmetu02g0350 . 4 340 G2-like Transcription Factor Family AT2G03500 50.3 3.3e-79 292.7
Cmetu10g0277 . 19 255 G2-like Transcription Factor Family AT1G25550 51.0 3.8e-52 202.2
Cmetu03g2101 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 2.5e-51 199.5
Cmetu12g0038 . 1 270 G2-like Transcription Factor Family AT3G46640 51.3 5.8e-60 228.4
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT5G05090 55.4 1.5e-74 276.6
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT5G05090 54.5 4.7e-68 255.0
Cmetu06g0187 . 12 315 G2-like Transcription Factor Family AT4G13640 57.1 8.4e-66 247.7
Cmetu04g1868 . 88 396 G2-like Transcription Factor Family AT3G04450 50.2 2.3e-58 223.4
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu05g0010 . 3 252 G2-like Transcription Factor Family AT1G69580 51.6 6.0e-52 201.8
Cmetu01g1460 . 1 394 G2-like Transcription Factor Family AT1G79430 52.1 2.2e-84 309.7
Cmetu11g1511 . 1 362 G2-like Transcription Factor Family AT1G79430 52.0 4.0e-78 288.9
Cmetu06g0187 . 39 203 G2-like Transcription Factor Family AT1G79430 63.6 7.8e-42 168.3
Cmetu04g1972 . 84 300 G2-like Transcription Factor Family AT2G01060 65.6 1.2e-54 210.3
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 2.9e-91 332.4
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT3G10760 58.2 4.7e-81 298.5
Cmetu08g1522 . 1 191 G2-like Transcription Factor Family AT2G40970 63.8 2.8e-62 235.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7651 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Cmetu TF